Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0052
(709 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein ... 39 0.003
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 32 0.43
At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At2g35130.1 68415.m04309 pentatricopeptide (PPR) repeat-containi... 30 1.3
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 30 1.3
At5g19010.1 68418.m02258 mitogen-activated protein kinase, putat... 30 1.7
At2g35230.2 68415.m04322 VQ motif-containing protein contains PF... 29 3.0
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF... 29 3.0
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 3.0
At1g54170.1 68414.m06175 ataxin-2-related similar to SCA2 (GI:17... 29 3.0
At1g53560.1 68414.m06078 expressed protein 29 3.0
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel... 29 4.0
At1g15415.1 68414.m01848 expressed protein very low similarity t... 28 5.3
At2g34830.1 68415.m04276 WRKY family transcription factor 28 7.0
At5g66840.1 68418.m08427 SAP domain-containing protein contains ... 27 9.2
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 27 9.2
At2g46380.1 68415.m05773 hypothetical protein weak similarity to... 27 9.2
At1g12810.1 68414.m01488 proline-rich family protein contains pr... 27 9.2
At1g12380.1 68414.m01431 expressed protein 27 9.2
>At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 718
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 51 PVNAAEQSKQSGRKTYYSEYER-RYISVPESTYIPTETKFQAQPDPSPQYYYDNNEQPEP 227
P AA + R + + E RYISVP +T P T+F +Q P P + N + P P
Sbjct: 570 PAPAASLLRDVRRTSVVWDQEAGRYISVPATTSEP-RTRFSSQNQPIPSSHMGNTQNPRP 628
Query: 228 VEH 236
V H
Sbjct: 629 VGH 631
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 523 EESVDRYNPNNYQSPSSLEHPPVQSHTLIPAPHGTYHNPNV-PNY 654
++S + N Y S S+ PP+ T H YHN N PNY
Sbjct: 19 QQSFPSSSTNRYNSRSAQSSPPLNHCTTWNQQHSQYHNTNFPPNY 63
>At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 341
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 544 NPNN-YQSPSSL-EHPPVQSHTLIPAPHGTYHNPNVPNYHSRA 666
NPN YQ P+S HPP + L P H H+P P YH+ +
Sbjct: 60 NPNPVYQYPASYYHHPPPGAMPLPPYDHHLQHHPPHP-YHNHS 101
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 544 NPNN-YQSPSSL-EHPPVQSHTLIPAPHGTYHNPNVPNYHSRA 666
NPN YQ P+S HPP + L P H H+P P YH+ +
Sbjct: 60 NPNPVYQYPASYYHHPPPGAMPLPPYDHHLQHHPPHP-YHNHS 101
>At2g35130.1 68415.m04309 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 591
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 84 GRKTYYSEYERRYISVPESTYIPTETKF 167
G+K Y E E Y+ + ES Y+PTE +
Sbjct: 166 GQKFQYKEAESLYVQLLESRYVPTEDTY 193
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 132 PESTYIPTETKFQAQPDPSPQYYYDNNEQPEPVE 233
P Y P+ET+ P P +YYY ++ P P +
Sbjct: 660 PSPVYYPSETQ---SPPPPTEYYYSPSQSPPPTK 690
>At5g19010.1 68418.m02258 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK16) mitogen-activated protein
kinase (MAPK)(AtMPK16), PMID:12119167; similar to
ATMPK9, Arabidopsis thaliana, EMBL:AB038694
Length = 567
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 514 KGLEESVDRYNPNNYQSPSSLEHPPVQ-SHTLIPAPHGTYHNPNVPNYHS 660
K L+E +D P N+ PS++EH Q ++ +GT HNP H+
Sbjct: 362 KMLKEYLDGSEPTNFMYPSAVEHFKKQFAYLEEHYKNGTSHNPPERQQHA 411
>At2g35230.2 68415.m04322 VQ motif-containing protein contains
PF05678: VQ motif
Length = 295
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 111 ERRYISVPES-TYIPTETKFQAQPDPSPQYYYDNNEQPEP 227
+R YI E +Y+P +++ Q+QP P PQ P+P
Sbjct: 98 QRPYIPGHEQRSYMPAQSQSQSQPQPQPQPQQHMMPGPQP 137
>At2g35230.1 68415.m04321 VQ motif-containing protein contains
PF05678: VQ motif
Length = 402
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 111 ERRYISVPES-TYIPTETKFQAQPDPSPQYYYDNNEQPEP 227
+R YI E +Y+P +++ Q+QP P PQ P+P
Sbjct: 205 QRPYIPGHEQRSYMPAQSQSQSQPQPQPQPQQHMMPGPQP 244
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 432 GSQEWPKTNTLGRSRPLSSYAKNEPILER 518
GSQ P N+ GRSRP+SS K+ +E+
Sbjct: 708 GSQMSPVENSEGRSRPVSSKVKDSEQVEK 736
>At1g54170.1 68414.m06175 ataxin-2-related similar to SCA2
(GI:1770390) [Homo sapiens]; similar to ataxin-2
(GI:3005020) [Mus musculus]
Length = 587
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 577 EHPPVQSHTLIPAPHGTYHNPNVPNY 654
+HP + ++T +P+ TY++PN P Y
Sbjct: 530 QHPMMYNNTTQLSPNQTYYSPNSPQY 555
>At1g53560.1 68414.m06078 expressed protein
Length = 153
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 502 SPS*KGLEESVDRYNPNNYQSPSSLEHPPVQSHTLIPAPHGTYHNPNVPNY 654
SPS G + V Y P +Y P S HP + P P +H+ +V Y
Sbjct: 12 SPSSYGTFQGVPTYPPPSYPHPPS-HHPVIGIPQPSPPPGSPHHDISVHQY 61
>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
putative (CNGC18) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 706
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 78 QSGRKTYYSEYERRYISVPEST--YIPTETKFQAQPDPSPQYYYDNNEQ 218
QS + Y + +S+ ES+ Y P ET + + + + +YYY ++E+
Sbjct: 593 QSAWRRYKRRKLAKELSLHESSGYYYPDETGYNEEDEETREYYYGSDEE 641
>At1g15415.1 68414.m01848 expressed protein very low similarity to
LEA protein [Cicer arietinum] GI:2909420, seed
maturation protein PM30 [Glycine max] GI:4838147
Length = 96
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 532 VDRYNPNNYQSPSSLEHPP 588
+D+ NPNN SPS HPP
Sbjct: 75 LDKKNPNNTTSPSMPGHPP 93
>At2g34830.1 68415.m04276 WRKY family transcription factor
Length = 427
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 502 SPS*KGLEESVDRYNPNNYQSPSSLEHPP 588
SPS + + + + PNN PSS HPP
Sbjct: 307 SPSSRVFQNNSSKDEPNNSNLPSSSTHPP 335
>At5g66840.1 68418.m08427 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 551
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Frame = +1
Query: 544 NPNNYQSPSSLEHPPVQSH---TLIPAPHG--TY-----H--NPNVPNYHSRASTETREQ 687
NP N+ + S H P +SH T P PH +Y H PN+P YHS +E + Q
Sbjct: 333 NPANFYT--SRPHAP-RSHAPPTYAPRPHAPRSYAPINSHLPRPNIPPYHSYTYSEQQNQ 389
Query: 688 ATYKQP 705
+ P
Sbjct: 390 TNQRPP 395
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 150 PTETKFQAQPDPSPQYYYDNNEQPEPVEH 236
P + P PSP YY N+ P P H
Sbjct: 770 PPPSPAHYSPPPSPPVYYYNSPPPPPAVH 798
>At2g46380.1 68415.m05773 hypothetical protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 732
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 547 PNNYQSPSSLEHPPVQSHTLIPAPHGTYHNP-NVPNY 654
P+ YQ S E P + ++ + HG HNP NVP Y
Sbjct: 199 PSYYQYYSEPEPPCLYNNNSDVSLHGPMHNPANVPAY 235
>At1g12810.1 68414.m01488 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 129
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 529 SVDRYNPNNYQSPSSLEHPPVQSHTLIPAPHGTYHNPNVPNYH 657
S DR P +Y P H P + P P G P+ P++H
Sbjct: 2 SYDRVPPESYPPPGYQSHYPPPGYPSAPPPPG---YPSPPSHH 41
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 18 RGTAPNQSFVKPVNAAEQSKQSGRKTYYSEYERRYISVPESTYIPT 155
RGT PN + V P++ S S + + + +R S +T IP+
Sbjct: 110 RGTCPNFNSVTPISTITPSPTSSSSSPQTHHRKRNSSGAVTTAIPS 155
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,502,757
Number of Sequences: 28952
Number of extensions: 292664
Number of successful extensions: 1070
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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