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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0051
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60320.1 68416.m06742 expressed protein contains Pfam profile...    36   0.036
At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate syntha...    34   0.11 
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    33   0.19 
At5g41950.1 68418.m05108 expressed protein                             32   0.34 
At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)...    31   0.59 
At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi...    31   0.78 
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam...    30   1.4  
At5g02390.1 68418.m00162 expressed protein ; expression supporte...    30   1.4  
At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR...    30   1.8  
At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR...    30   1.8  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    30   1.8  
At1g07110.1 68414.m00756 fructose-6-phosphate 2-kinase / fructos...    30   1.8  
At1g45230.1 68414.m05193 defective chloroplasts and leaves prote...    29   2.4  
At3g59370.1 68416.m06621 expressed protein hypothetical protein ...    29   3.1  
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono...    29   4.1  
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono...    29   4.1  
At1g80810.1 68414.m09481 expressed protein similar to androgen-i...    29   4.1  
At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein (...    29   4.1  
At4g34412.1 68417.m04888 expressed protein                             28   5.5  
At4g22360.1 68417.m03232 SWIB complex BAF60b domain-containing p...    28   5.5  
At2g42900.1 68415.m05314 expressed protein                             28   5.5  
At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA...    28   7.2  
At5g24620.1 68418.m02908 thaumatin-like protein, putative simila...    28   7.2  
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i...    28   7.2  
At3g28790.1 68416.m03593 expressed protein                             28   7.2  
At3g28770.1 68416.m03591 expressed protein                             28   7.2  
At5g41320.1 68418.m05022 expressed protein                             27   9.6  

>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
           PF04782: protein of unknown function (DUF632), PF04783:
           protein of unknown function (DUF630)
          Length = 796

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 8/132 (6%)
 Frame = +1

Query: 166 PLGLPSPIMPPNQHDSKSTPKKQNPSSTILNKNKLNQEKSKEAKRASES--PSKKKTPAP 339
           P   PS + PP+   S ++ K+ +  ST  N+ +  Q K +     SES   S  ++   
Sbjct: 94  PSPAPSSVYPPSTSPSVASSKQPSVMSTSSNRRRKQQPKPRLPHILSESSPSSSPRSERS 153

Query: 340 VYMELTYVPHHGNSYYSAV-EFFKRVRARYYVFSGTEPSKEIYNALLDAKK-----TWED 501
            +M   Y   + NS YSA       V      +  + P  E +N     KK      + D
Sbjct: 154 NFMPNLYPSAYQNSTYSATPSHASSVWNWENFYPPSPPDSEFFNRKAQEKKHNSDNRFND 213

Query: 502 KDLEVTIIPTYD 537
           +D E T+   YD
Sbjct: 214 EDTE-TVRSEYD 224


>At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate synthase,
            UDP-forming, putative / trehalose-6-phosphate synthase,
            putative / UDP-glucose-glucosephosphate
            glucosyltransferase, putative similar to
            trehalose-6-phosphate synthase SL-TPS/P [Selaginella
            lepidophylla] GI:4100325; contains Pfam profiles PF00982:
            Glycosyltransferase family 20, PF02358:
            Trehalose-phosphatase
          Length = 942

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = +1

Query: 193  PPNQ--HDSKSTPKKQNPSSTILNKNKLNQEKSKEAKRASESPS--KKKTPAPVYMELTY 360
            PP++  H++  +  K + SS   N NK +Q   +  +++  + S    + P+P  +    
Sbjct: 839  PPSKSTHNNNKSGSKSSSSSNSNNNNKSSQRSLQSERKSGSNHSLGNSRRPSPEKISWNV 898

Query: 361  VPHHGNSYYSAVEFFKRVRARYYVFS 438
            +   G +Y+S      R  ARY + S
Sbjct: 899  LDLKGENYFSCAVGRTRTNARYLLGS 924


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +1

Query: 145 PIESWGKPLGLPSPIMP-PNQHDSKSTPKKQNPSSTILNKNKLNQEKSKEAKRASESPSK 321
           P  S  KP   P P+MP P+      TPK     S      K    K +E +   E P +
Sbjct: 399 PRTSEPKP-SKPEPVMPKPSDSSKPETPKTPEQPSPKPQPPKHESPKPEEPENKHELPKQ 457

Query: 322 KKTPAP 339
           K++P P
Sbjct: 458 KESPKP 463


>At5g41950.1 68418.m05108 expressed protein
          Length = 565

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 172 GLPSPIMPPNQHDSKSTPKKQNPSSTILNKNKLNQEKSKEAKRASESPSKKKTPA 336
           G P     P   +S S P + NP+  ++N+ ++N E+ +  +R     ++K   A
Sbjct: 161 GTPHSSASPFSRESASQPAENNPAMDLINRIQVNDEEGRSRQRVLAFAARKYASA 215


>At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)
           family protein similar to SP|Q99816 Tumor susceptibility
           gene 101 protein {Homo sapiens}; contains Pfam profile
           PF05743: Tumour susceptibility gene 101 protein (TSG101)
          Length = 368

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 454 KEIYNALLDAKKTWEDKDLEVTIIPTYDTDVLGYWVTENEEALEKYKIDLSPSAS-RCTI 630
           +EI N   +     E  + ++ +I   +TDVLG W+ EN+   +   +DL    S  C  
Sbjct: 234 EEINNGFKEMVIEKETLEQQLQVI-AMNTDVLGSWIRENQGKAKDLLVDLDVDDSFECID 292

Query: 631 NLQDHETSCAAYRL 672
           +L      C A  L
Sbjct: 293 SLSKQMLECTALDL 306


>At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing
            protein contains Pfam profile PF00515: TPR Domain
          Length = 1155

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 163  KPLGLPSPIMPP--NQHDSKSTPKKQNPSSTILNKNKLNQEKSKEAKRASESPSKKKT 330
            K +GL +P+ PP  ++ D+     K NP     N+N  NQE+S+  +R      K  T
Sbjct: 1069 KAIGLDNPVNPPPVSKTDTTQAAAKPNPVKE-SNRNTNNQERSQLEERIKAEKVKAVT 1125


>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 255

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 220 TPKKQNPSSTILNKNKLNQEKSKEAKRASESPSKKKTPAP 339
           T KKQ    + ++ N  N+ KS  +KR SES +K   P P
Sbjct: 140 TAKKQGKDKSSVSNNSSNRSKSS-SKRGSESRAKFSKPEP 178


>At5g02390.1 68418.m00162 expressed protein ; expression supported
           by MPSS
          Length = 835

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 166 PLGLPSP-IMPPNQHDSKSTPKKQNPSSTILNKNKLNQEKSKEAKRASESPSKK 324
           P G+P P I   ++ D +S  + + PSS + +K   N  +  + K   E  SKK
Sbjct: 66  PDGIPVPKIKLEDKTDVESVQRPKKPSSAVKSKESSNSGEKTKKKHNPEEKSKK 119


>At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1068

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +2

Query: 77  LLVTAKSLRRKDLNKAVKLLTKIRSSLGGNLSAYL 181
           L V   SLRRK  N+  +LL++I SSL  N+   L
Sbjct: 385 LCVVGASLRRKSKNEWERLLSRIESSLDKNIDNIL 419


>At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1068

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +2

Query: 77  LLVTAKSLRRKDLNKAVKLLTKIRSSLGGNLSAYL 181
           L V   SLRRK  N+  +LL++I SSL  N+   L
Sbjct: 385 LCVVGASLRRKSKNEWERLLSRIESSLDKNIDNIL 419


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +1

Query: 178 PSPIMPPNQHDSKSTPKKQNPSSTILNKNKLNQEKSKEAKRASESPSKKKTPAP 339
           PSP  P       S PK+  P S      K  Q K K      ESP K++ P P
Sbjct: 446 PSP-KPETPSHEPSNPKEPKPESPKQESPKTEQPKPKPESPKQESP-KQEAPKP 497


>At1g07110.1 68414.m00756 fructose-6-phosphate 2-kinase /
           fructose-2,6-bisphosphatase (F2KP) identical to
           fructose-6-phosphate
           2-kinase/fructose-2,6-bisphosphatase (F2KP) [Arabidopsis
           thaliana] GI:13096098
          Length = 744

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = +1

Query: 175 LPSPIMPPNQHDSKSTPKKQNPSSTILNKNKLNQEKSKEAKRASESPSKKKTPAPVYMEL 354
           +P+P    N +   +    +NP S   + +  N    K A+R SE        +P   E+
Sbjct: 191 VPAPAPSANSYLVYAADNAENPRSLSASGSFRNDSTPKAAQRNSEDSGVTVDGSPSAKEM 250

Query: 355 TYVPHHGNSYYSA 393
           T V    ++ YSA
Sbjct: 251 TIVVPDSSNIYSA 263


>At1g45230.1 68414.m05193 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to
           defective chloroplasts and leaves (DCL) protein
           SP:Q42463 from [Lycopersicon esculentum]
          Length = 219

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +1

Query: 373 GNSYYSAVEFFKRVRARYYVFSGTEPSKEIYNALLDAKKTWEDKDLEVTI 522
           GNS     E  +R R      S  E  +E  N+  D    WEDK LEVT+
Sbjct: 60  GNSESYGSELLRRPRIASEESSEEEEEEEEENSEGDEFVDWEDKILEVTV 109


>At3g59370.1 68416.m06621 expressed protein hypothetical protein
           F12F1.4 - Arabidopsis thaliana, EMBL:AC002131
          Length = 95

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 208 DSKSTPKKQNPSSTILNKNKLNQEKSKEAKRASESPSKKKTPA 336
           D++ T + +   + ++ +     E+ K+A+  +E+P +KKT A
Sbjct: 32  DAEKTNEDEEEKAAVITETPTVVEEEKKAEEVTETPEEKKTEA 74


>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
           splice site at exon 3, AC acceptor splice site at exon
           4;
          Length = 223

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +1

Query: 178 PSPIMP--PNQHDSKS--TPKKQNPSSTILNKNKLNQEKSKEAKRASESPSKKKTPAPV 342
           P PI    PN+  SK+  + KK  P++   +  +  +EK K    A+  P+KK   +PV
Sbjct: 120 PEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPV 178


>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
           splice site at exon 3, AC acceptor splice site at exon
           4;
          Length = 306

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +1

Query: 178 PSPIMP--PNQHDSKS--TPKKQNPSSTILNKNKLNQEKSKEAKRASESPSKKKTPAPV 342
           P PI    PN+  SK+  + KK  P++   +  +  +EK K    A+  P+KK   +PV
Sbjct: 203 PEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPV 261


>At1g80810.1 68414.m09481 expressed protein similar to
           androgen-induced prostate proliferative shutoff
           associated protein (GI:4559410) [Homo sapiens]; similar
           to bimD (GI:168025) [Emericella nidulans]
          Length = 826

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = +1

Query: 109 RFEQSSKTFDKDPIESWGKPLGLPSPIMPPNQHDSKSTPKKQNPSSTILNKNKL---NQE 279
           R  +  K +  + ++S G  L + SP++        +TPK  +P +T  ++ KL   +  
Sbjct: 223 RCARKLKPYIIEALKSRGTSLDMYSPVVSSICQSVFNTPKVHSPVNTKEHEEKLDLGHSR 282

Query: 280 KSKEAKRASESPSKKKT 330
           K   +K +S+ P++ +T
Sbjct: 283 KENLSKSSSKRPARHET 299


>At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein
           (RAP-1) identical to bHLH protein GB:CAA67885 GI:1465368
           from [Arabidopsis thaliana]
          Length = 623

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +1

Query: 121 SSKTFDKDPIESWGKP-LGLPSPIMPPNQHDSKSTPKKQNPSSTILNKNKLNQEKSKEAK 297
           S   ++ DP +    P + +  PI  P  ++    P    PSS+    +K  Q ++  + 
Sbjct: 262 SGLNWNLDPDQGENDPSMWINDPIGTPGSNE----PGNGAPSSSSQLFSKSIQFENGSSS 317

Query: 298 RASESPSKKKTPAPVYMELTYVPHHGNSYYSAVEF 402
             +E+P+   TP+PV+ + T  P   N++   + F
Sbjct: 318 TITENPNLDPTPSPVHSQ-TQNPKFNNTFSRELNF 351


>At4g34412.1 68417.m04888 expressed protein
          Length = 143

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 430 VFSGTEPSKEIYNALLDAKKTWEDKDLEVTIIP 528
           +FSG   SKE+ N++LD     E   L  ++IP
Sbjct: 16  LFSGVTNSKELLNSMLDGSLKLEVSFLNASLIP 48


>At4g22360.1 68417.m03232 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 385

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = +1

Query: 145 PIESWGKPLGLPSPI-MPPNQHDSKSTPKKQNPSSTILNKNKLNQEKSKEAKRASESPSK 321
           P  S+      P P+ MPP QH  +    +Q  SS +L+          +A + S     
Sbjct: 129 PYHSYDLNFRQPYPVYMPPQQHQHQQQSPRQQQSSVMLSHGGNASLSVNQAPKESAPAGT 188

Query: 322 KKTPAP 339
           K+   P
Sbjct: 189 KRKGGP 194


>At2g42900.1 68415.m05314 expressed protein
          Length = 276

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 398 NSSNESAHVIMFSPELNLRKKFTTPFLTPKRLGRIKIW 511
           + ++   +VI  SP L  RKKF+    +  R   ++IW
Sbjct: 131 SGASHGEYVIRLSPSLTERKKFSNAVESALRRSMVRIW 168


>At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA1)
           identical to half-molecule ABC transporter ATM3
           GI:9964121 from [Arabidopsis thaliana]; almost identical
           to mitochondrial half-ABC transporter STA1 GI:9187883
           from [Arabidopsis thaliana]; identical to cDNA
           mitochondrial half-ABC transporter (STA1 gene)GI:9187882
          Length = 728

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +1

Query: 178 PSPIMPPNQHDSKSTPKKQNPSSTILNKNKLNQEKSKEAKRASESPSKKKTPAPV 342
           P P +P   +  +S  +  N  S  + +N +       A  +  SPS   +P+P+
Sbjct: 22  PQPKIPSFSYSLRSDYRLHNGFSNYIRRNSIRTSPVINAFLSDNSPSPSPSPSPI 76


>At5g24620.1 68418.m02908 thaumatin-like protein, putative similar
           to thaumatin-like protein [Arabidopsis thaliana]
           GI:2435406; contains Pfam profile PF00314: Thaumatin
           family
          Length = 420

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
 Frame = +1

Query: 157 WGKPLGLPSPIMP-PNQHDSKSTPKKQN------PSSTI---LNKNKLNQEKSKEAKRAS 306
           +G+P+  P+P  P PN+      P+ QN      P  T+    N   +N     +++R +
Sbjct: 332 YGQPMAPPTPPPPGPNEDSMTPPPQNQNGDGQFMPPPTLDQDPNDQYMNPPIQDQSQRET 391

Query: 307 ESPSKKKTPAPVYMELTY 360
           +S S    P PV + L +
Sbjct: 392 QSSSDLLRPYPVLLLLGF 409


>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
            identical to cDNA CIP4.1 mRNA for COP1-interacting
            protein 4.1,  GI:13160649
          Length = 976

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 160  GKPLGLPSPIMPPNQHDSKSTPKKQNPSSTILNKNKLN-QEKSKEAKRASESPSKKKT 330
            G  + L    M    ++ K   KK + S T+ NK+K+N   K K  K+ S S +  K+
Sbjct: 870  GSKVDLSDAPMKGTVNNKKEAVKKSSKSVTV-NKSKMNVNNKEKAVKKISNSVTANKS 926


>At3g28790.1 68416.m03593 expressed protein 
          Length = 608

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 178 PSPIMPPNQHDSKSTPKKQNPSSTILNKNKLNQEKSKEAKRASESPSKKKT 330
           P+P  P     + STP    P+ +     K +++ S+ A    ES SK ++
Sbjct: 291 PTPSTPTPSTPTPSTPTPSTPAPSTPAAGKTSEKGSESASMKKESNSKSES 341


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 202  QHDSKSTPKKQNPSSTILNKNKLNQEKSKEAKRASESPSKKK 327
            + ++  + KK++      NK+   +E  KE K+  ES S+KK
Sbjct: 1072 ESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKK 1113


>At5g41320.1 68418.m05022 expressed protein 
          Length = 515

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 193 PPNQHDSKSTPKKQNPSSTILNKNKLNQEKSKEAKRASESPSKKKT-PAPVYMELTYVPH 369
           PPN+    +   K+     +  K K  +EK K+ +      S+K++ P    +E+ Y+P 
Sbjct: 146 PPNKRGVAAVAAKRPVKKRMTKKKKEEEEKMKKKEEEETKESEKQSKPGESGLEM-YIPE 204

Query: 370 HGNS 381
             +S
Sbjct: 205 EKSS 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,135,751
Number of Sequences: 28952
Number of extensions: 316310
Number of successful extensions: 1302
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)

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