Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0043
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64180.1 68414.m07270 intracellular protein transport protein...    29   3.7  
At3g01060.3 68416.m00009 expressed protein                             28   4.9  
At3g01060.2 68416.m00007 expressed protein                             28   4.9  
At3g01060.1 68416.m00008 expressed protein                             28   4.9  
At1g51690.2 68414.m05825 serine/threonine protein phosphatase 2A...    27   8.6  
At1g51690.1 68414.m05824 serine/threonine protein phosphatase 2A...    27   8.6  

>At1g64180.1 68414.m07270 intracellular protein transport protein
           USO1-related similar to Rap8 (GI:2326183) [Rhynchosciara
           americana]; contains weak similarity to
           Swiss-Prot:P25386 intracellular protein transport
           protein USO1 [Saccharomyces cerevisiae]
          Length = 593

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +2

Query: 275 ISDHQEVGLLNHQPKSLGAL---VHLALGPHHHLWE 373
           ++D+  + L +HQP+S G++   +   L  HHHL E
Sbjct: 117 VADNNGIELTDHQPESAGSIRRQIGQMLMKHHHLTE 152


>At3g01060.3 68416.m00009 expressed protein
          Length = 372

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 384 TAAASHRWW*GPRARWTKAPKLFGWWFRRPTSWWSEIPCVFFAMF 250
           T A  H+ + GP +R  K PK   W   R  SW   +P  FF +F
Sbjct: 164 TFAYEHKIFVGPFSR--KFPKAQVWVAPRQWSWPLNLPLEFFGIF 206


>At3g01060.2 68416.m00007 expressed protein
          Length = 442

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 384 TAAASHRWW*GPRARWTKAPKLFGWWFRRPTSWWSEIPCVFFAMF 250
           T A  H+ + GP +R  K PK   W   R  SW   +P  FF +F
Sbjct: 159 TFAYEHKIFVGPFSR--KFPKAQVWVAPRQWSWPLNLPLEFFGIF 201


>At3g01060.1 68416.m00008 expressed protein
          Length = 455

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 384 TAAASHRWW*GPRARWTKAPKLFGWWFRRPTSWWSEIPCVFFAMF 250
           T A  H+ + GP +R  K PK   W   R  SW   +P  FF +F
Sbjct: 164 TFAYEHKIFVGPFSR--KFPKAQVWVAPRQWSWPLNLPLEFFGIF 206


>At1g51690.2 68414.m05825 serine/threonine protein phosphatase 2A
           (PP2A) 55 kDa regulatory subunit B identical to 55 kDa B
           regulatory subunit of phosphatase 2A (GI:710330)
           [Arabidopsis thaliana]; similar to type 2A protein
           serine/threonine phosphatase 55 kDa B regulatory
           GI:1408460 [Arabidopsis thaliana]; contains Pfam
           PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
          Length = 512

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +3

Query: 348 WALTTTYGRLRLWWIMDVFKAVITFQY*QYLKKTNIVLCISMYEKNNIF 494
           + L+  Y  L+LW I      V TFQ  +YLK     LC  +YE ++IF
Sbjct: 355 YLLSRDYMTLKLWDINMDAGPVATFQVHEYLKPK---LC-DLYENDSIF 399


>At1g51690.1 68414.m05824 serine/threonine protein phosphatase 2A
           (PP2A) 55 kDa regulatory subunit B identical to 55 kDa B
           regulatory subunit of phosphatase 2A (GI:710330)
           [Arabidopsis thaliana]; similar to type 2A protein
           serine/threonine phosphatase 55 kDa B regulatory
           GI:1408460 [Arabidopsis thaliana]; contains Pfam
           PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
          Length = 513

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +3

Query: 348 WALTTTYGRLRLWWIMDVFKAVITFQY*QYLKKTNIVLCISMYEKNNIF 494
           + L+  Y  L+LW I      V TFQ  +YLK     LC  +YE ++IF
Sbjct: 356 YLLSRDYMTLKLWDINMDAGPVATFQVHEYLKPK---LC-DLYENDSIF 400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,124,430
Number of Sequences: 28952
Number of extensions: 216296
Number of successful extensions: 502
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)