Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0042
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing...    29   3.4  
At4g35870.1 68417.m05094 expressed protein                             28   5.9  
At5g06460.1 68418.m00724 ubiquitin activating enzyme 2 (UBA2) E1...    27   7.8  

>At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing
           enzyme family protein low similarity to cis,cis-muconate
           lactonizing enzyme [Burkholderia sp. TH2] GI:23491535;
           contains Pfam profile: PF01188 Mandelate
           racemase/muconate lactonizing enzyme, C-terminal domain,
           PF02746: Mandelate racemase/muconate lactonizing enzyme,
           N-terminal domain
          Length = 410

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 177 LSIAIMRFGSKGGVAVVAILRSWNLYLEVGGAFTL*MSMGSSNHLTPG 320
           ++I + + G    + V+ + RS  + L +GG     ++MG S HL  G
Sbjct: 313 VNIKLAKTGILESLEVIELARSSGIELMIGGMVETRLAMGFSGHLAAG 360


>At4g35870.1 68417.m05094 expressed protein
          Length = 817

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 23/88 (26%), Positives = 37/88 (42%)
 Frame = -3

Query: 587 LKCFFITFVTIIRPLSLCIFELSSVGRR*VRINASFCYIAMIFSFELSSA*KCIDLVRNI 408
           L   + +F  ++ P+    F     G R +    +F Y+  +  F   +  K +D V  I
Sbjct: 679 LTMIYSSFAPLVVPVGAVYF-----GYRYIVDKYNFLYVYRVRGFPAGNEGKLMDTVLCI 733

Query: 407 KRFCRELVITLNFFILFFYCLGGWTSPQ 324
            RFC +L +     +LFF   G  T  Q
Sbjct: 734 MRFCVDLYLV--SMLLFFSVKGDSTKLQ 759


>At5g06460.1 68418.m00724 ubiquitin activating enzyme 2 (UBA2) E1;
           identical to gi:1703477
          Length = 1077

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 42  DNLSSIAAFIVQNKFSDDLEQDLMSRKIYIYSR 140
           D + S+A F   N  + ++++DL SR++ +Y R
Sbjct: 52  DTVMSMAEFGNDNSNNQEIDEDLHSRQLAVYGR 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,068,539
Number of Sequences: 28952
Number of extensions: 268671
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)