Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0039
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63490.1 68414.m07179 transcription factor jumonji (jmjC) dom...    32   0.40 
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ...    29   2.8  
At5g64270.1 68418.m08074 splicing factor, putative similar to sp...    28   5.0  
At3g25910.1 68416.m03230 expressed protein                             28   5.0  
At3g02490.1 68416.m00237 pentatricopeptide (PPR) repeat-containi...    28   5.0  
At1g61300.1 68414.m06909 disease resistance protein (NBS-LRR cla...    28   6.6  
At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger) fa...    27   8.7  

>At1g63490.1 68414.m07179 transcription factor jumonji (jmjC)
           domain-containing protein similar to PLU-1 protein
           (GI:4902724) [Homo sapiens] and PLU1 (GI:22726257) [Mus
           musculus]; similar to Retinoblastoma-binding protein 2
           (RBBP-2) (SP:P29375) {Homo sapiens}; contains Pfam
           PF02373: jmjC domain
          Length = 1116

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 467 NMLSHVGHVILGMNTVQLYMKVPGSRTPGHQENNNFCSIN-LNIGPGDCEWFGVP 628
           +ML  + H I G+    LY+ +  S    H E++ F S+N L+ G   C W+G+P
Sbjct: 50  SMLQAIRHNINGVTVPWLYLGMLFSSFCWHFEDHCFYSVNYLHWGEAKC-WYGIP 103


>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
            DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
            [Arabidopsis thaliana]
          Length = 1576

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
 Frame = +2

Query: 305  APLSDSDSG--PAKRRRAARMLRFGTNVDLSDERKWRP-QLA--ELQKLPAFARVASAAN 469
            AP  D+ +   P K+R  ++  + G N+DL    K +P  LA    Q  P  A      N
Sbjct: 1340 APGEDASAAKQPEKKRSRSKKRKSGNNLDLGKMEKSKPSDLANENEQTEPKSANNLDLGN 1399

Query: 470  MLSHVGHVILGMNTVQLYMKVPGSRTPGHQENNNFCSINLNIGPGD 607
            M  +    +   N  Q  +++P +   G+ E     S+ LN+  GD
Sbjct: 1400 MKENTPSDLANENE-QTELRLPNNSDYGNMEE----SLPLNLANGD 1440


>At5g64270.1 68418.m08074 splicing factor, putative similar to
           splicing factor 3B subunit 1 (Spliceosome associated
           protein 155) (SAP 155) (SF3b155) (Pre-mRNA splicing
           factor SF3b 155 kDa subunit) (146 kDa nuclear protein)
           SP:O57683 from [Xenopus laevis]
          Length = 1269

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 39  HRRGAADSPPLSNSTSDCSRRRH*W 113
           H++ +A  PP S+S+S  S+RRH W
Sbjct: 171 HQKDSAPPPPASSSSSS-SKRRHRW 194


>At3g25910.1 68416.m03230 expressed protein
          Length = 372

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/87 (25%), Positives = 33/87 (37%)
 Frame = +2

Query: 143 RTQLMQSADENWDATGRRRVWACASHRSHTTVRKYAQYQAGSFQESLREERERAAPLSDS 322
           R +   S   +W  T R R       RS      + +   G+   S R+E    +  SD 
Sbjct: 290 RPESSGSRSSSWSGTSRARTHTSGRRRSSRPASLWGESYEGNTGTSPRDEENNQS--SDE 347

Query: 323 DSGPAKRRRAARMLRFGTNVDLSDERK 403
                +RRR+ R     T +D  DE +
Sbjct: 348 QVSGTRRRRSRRR----TVIDDDDEEE 370


>At3g02490.1 68416.m00237 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 665

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
 Frame = +2

Query: 32  NTPSPWCCGL-----TAALKLDLGLFSTKTL 109
           NTP+P CC L       A KLD+ LF T+TL
Sbjct: 349 NTPTPHCCSLLLKKIVTAKKLDMDLF-TRTL 378


>At1g61300.1 68414.m06909 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 762

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 50  CCGLTAALKLDLGLFSTKTLVEAWPDHAVEVRTQ 151
           C GL  AL +     ++KT+V+ W +HA++V T+
Sbjct: 233 CRGLPLALSVIGETMASKTMVQEW-EHAIDVLTR 265


>At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 634

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +1

Query: 349 RRPH---APLRHQRRPLRRTQVAPAARGAPE 432
           RRPH   APLR+QR   R   +   AR  PE
Sbjct: 26  RRPHSPVAPLRYQREEYRNHHLHGRARPVPE 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,556,156
Number of Sequences: 28952
Number of extensions: 238324
Number of successful extensions: 1124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)