Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0036
         (443 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21215.1 68416.m02681 RNA-binding protein, putative contains ...    29   1.1  
At4g01290.1 68417.m00170 expressed protein                             29   1.4  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   3.3  
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    28   3.3  
At2g20585.2 68415.m02406 expressed protein                             27   5.7  
At2g20585.1 68415.m02405 expressed protein                             27   5.7  
At1g34170.1 68414.m04238 transcriptional factor B3 family protei...    27   7.5  
At5g62470.1 68418.m07839 myb family transcription factor (MYB96)...    26   10.0 
At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger) fa...    26   10.0 
At4g20060.1 68417.m02935 expressed protein  ; expression support...    26   10.0 
At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to ...    26   10.0 

>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
           recognition motif, Pfam:PF00076; contains AT-AC splice
           sites at intron 8
          Length = 339

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = +3

Query: 159 PLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLL 326
           P +A     P H       PPP  +  D  +  P D +  +    LP+D     LL
Sbjct: 21  PPAAVSSAAPPHPPPIHHHPPPPPVLVDNHNRPPYDELRTIFIAGLPDDVKERELL 76


>At4g01290.1 68417.m00170 expressed protein 
          Length = 991

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 111 MLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVAPGDSV 272
           +L +  R S+ +S    L +  +  P   +   T+PPP   +T A    PG S+
Sbjct: 612 LLSLLQRSSDPKSQDTQLLSATERRPPPPSMKTTTPPPSVKSTTAGEADPGKSL 665


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 345 RLPAGPAANIRARCPLAAYLRSPPPRYRR 259
           R P+ PA   R+  P A   RSP P YRR
Sbjct: 370 RSPSPPARRRRSPSPPARRRRSPSPLYRR 398



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 345 RLPAGPAANIRARCPLAAYLRSPPPRYRR 259
           R P+ PA   R+  PL    RSP P YRR
Sbjct: 380 RSPSPPARRRRSPSPLYRRNRSPSPLYRR 408



 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -3

Query: 345 RLPAGPAANIRARCPLAAYLRSPPPRYRR 259
           R P  PA   R+  P A   RSPPP  RR
Sbjct: 341 RSPTPPARQRRSPSPPARRHRSPPPARRR 369


>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
            similar to BEIGE (GI:3928547) [Rattus norvegicus];
            Similar to gb|U70015 lysosomal trafficking regulator from
            Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
            repeats. ESTs gb|T43386 and gb|AA395236 come from this
            gene
          Length = 3601

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 231  ITTDAQSVAPGDSVEVVIAGKLPEDTLRGYLLQA 332
            +T+D + +  GDS   +++  +P++TLR  + QA
Sbjct: 3550 LTSDLKQLLSGDSAGQLLSWTVPDETLRASMKQA 3583


>At2g20585.2 68415.m02406 expressed protein
          Length = 100

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = +3

Query: 75  MKVYACLCAAVVMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSP 218
           M   A L  A  ML   S  S A STG   S  +   P   ATA+ SP
Sbjct: 1   MATSAVLSGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSP 48


>At2g20585.1 68415.m02405 expressed protein
          Length = 100

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = +3

Query: 75  MKVYACLCAAVVMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSP 218
           M   A L  A  ML   S  S A STG   S  +   P   ATA+ SP
Sbjct: 1   MATSAVLSGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSP 48


>At1g34170.1 68414.m04238 transcriptional factor B3 family protein
           contains Pfam profile: PF02362 B3 DNA binding domain;
           contains non-consensus GA donor splice site at intron 12
          Length = 623

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 126 SRVSEARSTGAPLSACRDMMPQHNATAQTSP 218
           ++VS+++ +  P+ +C+  +PQ     QT P
Sbjct: 464 TKVSKSKDSICPIESCKKSLPQDKKFDQTQP 494


>At5g62470.1 68418.m07839 myb family transcription factor (MYB96)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 351

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 49  YRSVKKEAS*RCTRACALRW 108
           +RSV      RC+++C LRW
Sbjct: 37  WRSVPTHTGLRCSKSCRLRW 56


>At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 740

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +3

Query: 96  CAAVVMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPP 221
           C  +  L   S  S  RST +P   CR    Q     QTS P
Sbjct: 42  CVKLAFLSGGSNPSTPRSTSSPSLRCRTADAQTPTAEQTSTP 83


>At4g20060.1 68417.m02935 expressed protein  ; expression supported
           by MPSS
          Length = 1134

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 15  CRTTRSSLRAVLQISEEGSIMKVYACLCAAVVMLV 119
           C T  S L  ++ I+E  S  ++++  C A+ +LV
Sbjct: 348 CMTDASELLQLIAITENASHSQIFSSSCLAISVLV 382


>At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to
           Ca(2+)-dependent nuclease [Arabidopsis thaliana]
           GI:7684292; supporting cDNA gi|7684291|dbj|D84226.1|
          Length = 323

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 228 TITTDAQSVAPGDSVEVVIAGKLP 299
           T+  D +SVA GD+V V ++ K P
Sbjct: 131 TLPVDTKSVADGDTVTVYVSSKDP 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,694,166
Number of Sequences: 28952
Number of extensions: 127138
Number of successful extensions: 644
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)