Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E01
(396 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla... 112 9e-26
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ... 104 2e-23
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z... 103 6e-23
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ... 54 5e-08
At5g10880.1 68418.m01263 tRNA synthetase-related / tRNA ligase-r... 29 1.1
At3g15870.1 68416.m02007 fatty acid desaturase family protein si... 28 2.6
At5g02440.1 68418.m00169 expressed protein 27 4.5
At2g28250.1 68415.m03429 protein kinase family protein contains ... 27 6.0
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi... 27 6.0
At1g28320.1 68414.m03475 protease-related similar to Protease de... 27 6.0
At4g31570.1 68417.m04483 expressed protein 26 7.9
At4g08350.1 68417.m01380 KOW domain-containing transcription fac... 26 7.9
At1g05440.1 68414.m00552 expressed protein ; expression supporte... 26 7.9
>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
(SODCP) / copper/zinc superoxide dismutase (CSD2)
identical to GP:3273753:AF061519
Length = 216
Score = 112 bits (269), Expect = 9e-26
Identities = 52/91 (57%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Frame = +2
Query: 125 KAVCVLHG--DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGA 298
KAV VL G DV G V Q D+S P V+ + GL+ G HGFH+HEFGD TNGC S G
Sbjct: 66 KAVAVLKGTSDVEGVVTLTQ-DDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGP 124
Query: 299 HFNPLKQEHGAPDSDTRHIGDLGNIEASSDG 391
HFNP HGAP+ + RH GDLGNI A++DG
Sbjct: 125 HFNPNNMTHGAPEDECRHAGDLGNINANADG 155
>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
copper/zinc superoxide dismutase (CSD1) identical to
SWISS-PROT: P24704
Length = 152
Score = 104 bits (249), Expect = 2e-23
Identities = 50/92 (54%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Frame = +2
Query: 122 AKAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAG 295
AK V VL+ V+GT+FF Q+ + VSG V GL G HGFHVH GD TNGC S G
Sbjct: 2 AKGVAVLNSSEGVTGTIFFTQEGDGV-TTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60
Query: 296 AHFNPLKQEHGAPDSDTRHIGDLGNIEASSDG 391
HFNP + HGAP+ RH GDLGNI DG
Sbjct: 61 PHFNPDGKTHGAPEDANRHAGDLGNITVGDDG 92
>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
superoxide dismutase (CSD3) identical to copper/zinc
superoxide dismutase GI:3273755
Length = 164
Score = 103 bits (246), Expect = 6e-23
Identities = 49/91 (53%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Frame = +2
Query: 125 KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGA 298
+AV ++ GD V G + F Q D S V+G++ GLS G HGFH+H FGD TNGC S G
Sbjct: 9 RAVALIAGDNNVRGCLQFVQ-DISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67
Query: 299 HFNPLKQEHGAPDSDTRHIGDLGNIEASSDG 391
HFNPL + HG P+ + RH GDLGNI A S+G
Sbjct: 68 HFNPLNRVHGPPNEEERHAGDLGNILAGSNG 98
>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
putative similar to copper chaperone for superoxide
dismutase [Homo sapiens] gi|2431868|gb|AAC51764
Length = 254
Score = 53.6 bits (123), Expect = 5e-08
Identities = 29/81 (35%), Positives = 42/81 (51%)
Frame = +2
Query: 149 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHG 328
D+ G V F Q + GLS G H + ++E+GD TNG S G+ +NP + + G
Sbjct: 106 DIFGVVRFAQVSMEL-ARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTG 164
Query: 329 APDSDTRHIGDLGNIEASSDG 391
T +GDLG +EA +G
Sbjct: 165 -----TEPLGDLGTLEADKNG 180
>At5g10880.1 68418.m01263 tRNA synthetase-related / tRNA
ligase-related similar to SP|P07814 Bifunctional
aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase);
Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA
ligase)] {Homo sapiens}; contains Pfam profile PF03129:
Anticodon binding domain
Length = 309
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 113 GMPAKAVCVLHGDVSGTVFFDQKDESSPVVVSGEVKG 223
G P +A C+ HGD G VF + VV+ +KG
Sbjct: 81 GPPFEAACMTHGDDKGLVFPPKVAPVQVVVIHVPIKG 117
>At3g15870.1 68416.m02007 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 292
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 217 DFSRNNYW*AFILLVEENCSTHISVKNAYSFS-RHAVE 107
DFS+NN+W A + L E + H +A+ FS RH +E
Sbjct: 222 DFSKNNWWVAILTLGEGWHNNH----HAFEFSARHGLE 255
>At5g02440.1 68418.m00169 expressed protein
Length = 176
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 203 VSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHGAPDSDTRHIG 358
V+ + GL++G H H HE + G S + +P + D D++ +G
Sbjct: 15 VNARIGGLTRGTHHHHHHE--QVSAGSISFSSLLSPSPSSQSSSDLDSQSMG 64
>At2g28250.1 68415.m03429 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 565
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 359 LQCDEYPNQVHHAPALVG*SELQQRCNRWYCHQTHVHGNRACPY 228
L C P +H A +EL+Q N++ + HG +C Y
Sbjct: 182 LFCVSKPETIHGAIFQFSYTELEQATNKFSSNSVIGHGGSSCVY 225
>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 579
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 278 GCTSAGAHFNPLKQEHGAPDSDTRHIGDLG 367
G A HF+ +K EHG ++G LG
Sbjct: 352 GIEEAFLHFDSMKNEHGISPKTEHYLGVLG 381
>At1g28320.1 68414.m03475 protease-related similar to Protease degS
[Precursor] (SP:P44947) [Haemophilus influenzae];
similar to DegP protease precursor (GI:2565436)
[Arabidopsis thaliana]
Length = 709
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 149 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNT 274
DVS V F + V + KGL KH FH + G+ T
Sbjct: 2 DVSKVVSFSRNFAVLVKVEGPDPKGLKMRKHAFHQYHSGNAT 43
>At4g31570.1 68417.m04483 expressed protein
Length = 2712
Score = 26.2 bits (55), Expect = 7.9
Identities = 20/81 (24%), Positives = 34/81 (41%)
Frame = +3
Query: 99 HISSTACLLKLYAFFTEM*VEQFSSTKRMKAHQ*LFLEKSKDLVRASTVSMYMSLVTIPT 278
H+SS C K A + VEQF +T + + L + K + + L T
Sbjct: 583 HLSSELCNCKNLAAILKAEVEQFENTIGPLTDEKIHLVEEKYSLLGEAEKLQEELANCKT 642
Query: 279 VAPLLELTSTH*SRSMVHLIR 341
V L E+ +++ ++ L R
Sbjct: 643 VVTLQEVENSNMKETLSLLTR 663
>At4g08350.1 68417.m01380 KOW domain-containing transcription factor
family protein chromatin structural protein homolog
Supt5hp - Mus musculus,PID:g2754752
Length = 1029
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 116 MPAKAVCVLHGDVSGTVFFDQKDESSPVVVSGEVKGL 226
M AV V+ GD+ + +K + V++ EVKGL
Sbjct: 427 MKGDAVIVIKGDLKNLKGWVEKVDEENVLIRSEVKGL 463
>At1g05440.1 68414.m00552 expressed protein ; expression supported
by MPSS
Length = 393
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 188 SSPVVVSGEVKGLSKGKHGFHVHE 259
SS V+SG V ++GK G+ +HE
Sbjct: 285 SSITVLSGRVTEWTEGKFGYSIHE 308
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,157,927
Number of Sequences: 28952
Number of extensions: 155671
Number of successful extensions: 370
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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