Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D13
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32640.1 68417.m04646 sec23/sec24 transport protein-related         29   2.3  
At1g31580.1 68414.m03875 expressed protein identical to ORF1 [Ar...    29   2.3  
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati...    28   4.0  
At2g47030.1 68415.m05876 pectinesterase family protein contains ...    28   5.3  
At4g30996.1 68417.m04401 expressed protein                             27   9.3  
At1g66120.1 68414.m07504 acyl-activating enzyme 11 (AAE11) simil...    27   9.3  

>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
          Length = 1069

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -1

Query: 152 PTLGLRTLRGQDTEYWPVSYFRIVPSLRPRDPPSRIPSLPFRPA 21
           P  G+    G      P  +   VP  RP  PPSR PS   RP+
Sbjct: 90  PPAGMARPGGPPPVSQPAGFQSNVPLNRPTGPPSRQPSFGSRPS 133


>At1g31580.1 68414.m03875 expressed protein identical to ORF1
           [Arabidopsis thaliana] gi|457716|emb|CAA50905
          Length = 95

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 104 PVSYFR-IVPSLRPRDPPSR--IPSLP-FRPARSDFCH 3
           P+ + R IVP   P  PP R  IP LP +RP R  FC+
Sbjct: 43  PLGFTRPIVPIHVPGFPPRRPTIPQLPPYRPRRCPFCY 80


>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to
           SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
           LSm4 [Mus musculus]
          Length = 129

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 7   QKSERAGRNGREGMRDGGSRGRNEGT 84
           +K    GR    G+ DGG+RGR  GT
Sbjct: 88  RKPPGVGRGRGRGVDDGGARGRGRGT 113


>At2g47030.1 68415.m05876 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 588

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 19  RAGRNGREGMRDGGSRGRNEGTIRKYDTGQY 111
           +AGR GR G R GG+R R    + K  +GQ+
Sbjct: 258 KAGR-GRRGGRGGGARVRTNFVVAKDGSGQF 287


>At4g30996.1 68417.m04401 expressed protein
          Length = 172

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 86  FESMTRANTPCPDLVRSSSPTLDVFRITP 172
           F   TRAN+ CP  V    P L + +I P
Sbjct: 36  FVGSTRANSLCPPCVCDCPPPLSLLQIAP 64


>At1g66120.1 68414.m07504 acyl-activating enzyme 11 (AAE11) similar
           to AMP-binding protein GI:1903034 from [Brassica napus];
           contains Pfam AMP-binding domain PF00501; identical to
           cDNA acyl-activating enzyme 11 (At1g66120) GI:29893230,
           acyl-activating enzyme 11 [Arabidopsis thaliana]
           GI:29893231
          Length = 572

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
 Frame = -3

Query: 393 VYKPNFHCKLMAYVI--INTLIDNKTKQPVISLYE---IFCEYFYLIFVY--------YN 253
           +Y+ +F   +   V+  INT +D KT   ++   E   +F +Y +   +         Y 
Sbjct: 77  MYEMHFSVPMTGAVLNPINTRLDAKTIAIILRHAEPKILFVDYEFAPLIQEVLRLIPTYQ 136

Query: 252 HNPRPRLIMNVREYITLSPFHPKLSGDGVIR 160
             P PR+I+      T  PF  +L  +G+IR
Sbjct: 137 SQPHPRIILINEIDSTTKPFSKELDYEGLIR 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,420,545
Number of Sequences: 28952
Number of extensions: 260587
Number of successful extensions: 623
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)