Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C15
(560 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02550.2 68417.m00349 expressed protein 34 0.075
At4g02550.1 68417.m00348 expressed protein 29 2.1
At1g75640.1 68414.m08788 leucine-rich repeat family protein / pr... 29 2.1
At1g26680.1 68414.m03250 transcriptional factor B3 family protei... 29 2.1
At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP tra... 28 3.7
At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP tra... 28 3.7
At4g29270.1 68417.m04185 acid phosphatase class B family protein... 28 4.9
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 28 4.9
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 27 6.5
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 27 8.6
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 27 8.6
At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger) fa... 27 8.6
At2g45580.1 68415.m05668 cytochrome P450 family protein contains... 27 8.6
>At4g02550.2 68417.m00349 expressed protein
Length = 278
Score = 33.9 bits (74), Expect = 0.075
Identities = 30/113 (26%), Positives = 52/113 (46%)
Frame = +2
Query: 209 INEMKEFKKLLRTKTNVLVTYVNDFKSSQSVIDVFKETADSMKGQATLVIIDCISSEGKK 388
IN +K KK R ++L + SS +ID +D + + V D + GK+
Sbjct: 74 INRLKTIKKRYRVMRDILSRDGFWWNSSTKMIDC---ESDELWRRYIAVNPDAKAFRGKQ 130
Query: 389 LCKKLKIPSVEPYYIKHYKNGEFHKDYDRSETISSMSNFLRDPSGDLPWEEDP 547
+ ++ +V Y + + E H D D +E+ + S ++ + S DLP DP
Sbjct: 131 IEMYEELRTVCGDY-QTPGSSEEHSDTDGTESYAGASEYMHEESQDLPPPRDP 182
>At4g02550.1 68417.m00348 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 446 NGEFHKDYDRSETISSMSNFLRDPSGDLPWEEDP 547
+ E H D D +E+ + S ++ + S DLP DP
Sbjct: 178 SSEEHSDTDGTESYAGASEYMHEESQDLPPPRDP 211
>At1g75640.1 68414.m08788 leucine-rich repeat family protein /
protein kinase family protein contains protein kinase
domain, Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 1140
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 83 CVMLLAIKMHWNLFWSVFP--ILLLLQTEIFTHAKKTKTSVIMDINEMKEFK 232
CV L A+ +H+N F FP IL L ++ A + T + D+ K +
Sbjct: 115 CVFLRALYLHYNSFSGDFPPEILNLRNLQVLNAAHNSLTGNLSDVTVSKSLR 166
>At1g26680.1 68414.m03250 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 920
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 168 KISVCSSSSMGKTLQNRFQCIFIANSITQTYNL*NIL*NFSSK 40
K CSSSS QNRF + + S QTY L + N++S+
Sbjct: 879 KRKYCSSSSYS---QNRFVTLTLTRSAFQTYKLVSFFNNYASR 918
>At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 459
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 91 AIGNKDALESILECLSHTAATTNRNFYS-CKKDQNISHN 204
AIG + A+E +L+C + ++ R FY+ K Q S N
Sbjct: 322 AIGYRQAMEYLLQCRRYEGESSPREFYAFLNKFQTASRN 360
>At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 463
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 91 AIGNKDALESILECLSHTAATTNRNFYS-CKKDQNISHN 204
AIG + A+E +L+C + ++ R FY+ K Q S N
Sbjct: 322 AIGYRQAMEYLLQCRRYEGESSPREFYAFLNKFQTASRN 360
>At4g29270.1 68417.m04185 acid phosphatase class B family protein
similar to acid phosphatase [Glycine max] GI:3341443;
contains Pfam profile PF03767: HAD superfamily
(subfamily IIIB) phosphatase
Length = 256
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 407 IPSVEPYYIKHYKNG-EFHKDYD 472
IPS YIK+Y NG +F KDYD
Sbjct: 62 IPSQCENYIKNYINGGQFDKDYD 84
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 27.9 bits (59), Expect = 4.9
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Frame = +2
Query: 191 TSVIMDINEMKEFKKLLRTKTNVLVTYVNDFKSSQSV-IDVFKETADSMKGQATLV--II 361
+SV+ + ++ E KK LV + DF+S S ++++ T D + I
Sbjct: 236 SSVVNSVKKLVEMKK-----EQFLVRGLEDFESFFSGDMNLYHYTKDQFHFVLASMNEIE 290
Query: 362 DCISSEGKKLCKKLKIPSVEPYYIKHYKNGEFHKD-YDRSETISSM 496
+ +E K++ +K+K+ EPY + EF + YD + +SS+
Sbjct: 291 GVVGTETKEIVRKIKMLVTEPYDDLKNRREEFERGWYDILKDLSSL 336
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 68 HRLYVCVMLLAIKMHWNLFWSVFPILLLLQTEIFTHAKKTKTSVIMDINE 217
HRL + AI +W+L V L ++T++ +H +K + DI E
Sbjct: 528 HRLEYLYICKAISQYWDLPGGVISYLRTVETDL-SHMQKEGGDEVSDIGE 576
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 194 MFWSFLHE*KFLFVVAA-VWERHSKIDSSASLLPIA*HKHTI 72
+F+SFL F+ +W +SK+ S + LPI H H I
Sbjct: 7 IFFSFLTATLIFFITKKFLWSLNSKLPPSPTPLPIIGHLHLI 48
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 407 IPSVEPYYIKHYKNGEFHKDYDRSETISSMSNFLRDP 517
+PS P+Y HY+N E + S S ++F P
Sbjct: 303 LPSTSPHYPSHYQNPEPYYSSPHSAPAPSSTSFSSAP 339
>At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 371
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 377 EGKKLCKKLKIPSVEPYYIKHYKNGEFHKDYDRSETISSMSNFLR 511
E ++L K I S P I H+ + +FH + + S+ S FLR
Sbjct: 105 EKERLLKTRNISSSSPISI-HHSHDDFHSEEEESQFSSFDEQFLR 148
>At2g45580.1 68415.m05668 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome p450
Length = 515
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 179 KKTKTSVIMDINEMKEFKKLLRTKTNVLVTYVNDFKSSQSVIDV 310
KKT T ++ + + L K LV+ VN+F+ ID+
Sbjct: 134 KKTITKYLLSPQNLDAIQSLRMRKVEELVSLVNEFRERGEAIDL 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,774,425
Number of Sequences: 28952
Number of extensions: 202677
Number of successful extensions: 578
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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