Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C12
(361 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 102 8e-23
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 101 1e-22
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 101 1e-22
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote... 28 1.6
At1g51990.2 68414.m05865 O-methyltransferase family 2 protein si... 27 2.8
At1g51990.1 68414.m05864 O-methyltransferase family 2 protein si... 27 2.8
At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,... 27 5.0
At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,... 27 5.0
At4g20970.1 68417.m03036 basic helix-loop-helix (bHLH) family pr... 26 8.7
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 26 8.7
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 26 8.7
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 102 bits (244), Expect = 8e-23
Identities = 44/86 (51%), Positives = 60/86 (69%)
Frame = +2
Query: 104 MMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAA 283
M TVKDV + VK AAHLK+ GK+++P D+VKT + KELAPYDPDW+Y+R A+
Sbjct: 1 MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60
Query: 284 ILRHIYIRSPVGVKTVTKIFGGRKRN 361
+ R +Y+R +GV +I+GG KRN
Sbjct: 61 MARKVYLRGGLGVGAFRRIYGGSKRN 86
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 101 bits (243), Expect = 1e-22
Identities = 45/86 (52%), Positives = 59/86 (68%)
Frame = +2
Query: 104 MMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAA 283
M TVKDV VK A+HLK+ GK+++P D+VKT R KELAPYDPDW+Y+R A+
Sbjct: 1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60
Query: 284 ILRHIYIRSPVGVKTVTKIFGGRKRN 361
+ R IY+R +GV +I+GG KRN
Sbjct: 61 MARKIYLRGGLGVGAFRRIYGGSKRN 86
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 101 bits (242), Expect = 1e-22
Identities = 43/86 (50%), Positives = 59/86 (68%)
Frame = +2
Query: 104 MMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAA 283
M TVKDV VK A+HLK+ GK+++P D+VKT + KELAPYDPDW+Y+R A+
Sbjct: 1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60
Query: 284 ILRHIYIRSPVGVKTVTKIFGGRKRN 361
+ R +Y+R +GV +I+GG KRN
Sbjct: 61 MARKVYLRGGLGVGAFRRIYGGSKRN 86
>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
kinase, putative
Length = 666
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 164 AHLKKIGKVKVPDHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 310
+H V P+ D + T F+ ++ ++ WF C+A++ H+ + S
Sbjct: 15 SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64
>At1g51990.2 68414.m05865 O-methyltransferase family 2 protein
similar to caffeic acid O-methyltransferase GI:5031492
from [Ocimum basilicum], [SP|Q00763] [Populus
tremuloides]
Length = 363
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 157 CSRSLEKDRQSEGSRSYGLGK 219
C+ L KD + SR+YGLGK
Sbjct: 87 CTCKLVKDEEGRESRAYGLGK 107
>At1g51990.1 68414.m05864 O-methyltransferase family 2 protein
similar to caffeic acid O-methyltransferase GI:5031492
from [Ocimum basilicum], [SP|Q00763] [Populus
tremuloides]
Length = 363
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 157 CSRSLEKDRQSEGSRSYGLGK 219
C+ L KD + SR+YGLGK
Sbjct: 87 CTCKLVKDEEGRESRAYGLGK 107
>At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,
putative similar to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 615
Score = 26.6 bits (56), Expect = 5.0
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +2
Query: 119 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRH 295
T+KD EQ IV L + +VP+++ LV E P+D W + +C+A++ H
Sbjct: 433 TLKDTEQRGIVDRGWGGLGNLA-TEVPENVFLV------EDCPHD--WLFPQCSAVVHH 482
>At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,
putative similar to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 615
Score = 26.6 bits (56), Expect = 5.0
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +2
Query: 119 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRH 295
T+KD EQ IV L + +VP+++ LV E P+D W + +C+A++ H
Sbjct: 433 TLKDTEQRGIVDRGWGGLGNLA-TEVPENVFLV------EDCPHD--WLFPQCSAVVHH 482
>At4g20970.1 68417.m03036 basic helix-loop-helix (bHLH) family
protein
Length = 190
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 166 SGYSFDDFVLFNILHCNGTHHVY 98
+GYS D +F+ LHC H Y
Sbjct: 150 AGYSIVDDAVFHTLHCKVEEHDY 172
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 128 DVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTA 226
D +I+ T+ H KK+ VK DLV TA
Sbjct: 250 DRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTA 282
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 128 DVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTA 226
D +I+ T+ H KK+ VK DLV TA
Sbjct: 250 DRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTA 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,476,327
Number of Sequences: 28952
Number of extensions: 139018
Number of successful extensions: 325
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -