Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C11
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16090.1 68414.m01930 wall-associated kinase-related contains...    29   1.6  
At3g54260.1 68416.m05997 expressed protein various predicted pro...    28   2.1  
At3g45760.1 68416.m04946 hypothetical protein hypothetical prote...    28   2.1  
At1g55070.1 68414.m06290 F-box family protein contains Pfam prof...    28   2.1  
At4g19460.1 68417.m02862 glycosyl transferase family 1 protein c...    28   2.8  
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote...    26   8.6  
At4g23840.1 68417.m03428 leucine-rich repeat family protein            26   8.6  
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu...    26   8.6  

>At1g16090.1 68414.m01930 wall-associated kinase-related contains
           similarity to wall-associated kinase 2 GI:4826399 from
           [Arabidopsis thaliana]; similar to wall-associated
           kinase 1 (GI:3549626) [Arabidopsis thaliana]; contains
           one transmembrane domain
          Length = 317

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 151 TCDVMWGERGRCKEGLGYEC 210
           TCDV +G+RGR +   GY C
Sbjct: 161 TCDVGFGQRGRNRSCNGYRC 180


>At3g54260.1 68416.m05997 expressed protein various predicted
           proteins, Arabidopsis thaliana
          Length = 379

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 260 RIIFHTVRP---SFL*YTRPHSYPKPSLQRPLSPHITSHVRIIN 138
           ++IF TV P     + Y + H  P PSL     PH+    R++N
Sbjct: 263 KVIFRTVSPRESGQMCYNQKH--PLPSLSSSTKPHVPQQSRVLN 304


>At3g45760.1 68416.m04946 hypothetical protein hypothetical protein
           At2g39740 - Arabidopsis thaliana, EMBL:AC003000
          Length = 442

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 184 CKEGLGYECGRVYQRKDGRTV*KIIRLI 267
           C +G G EC    + KDG    +IIR+I
Sbjct: 161 CDQGTGIECDLTVESKDGILTSQIIRII 188


>At1g55070.1 68414.m06290 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 393

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 359 VPSYLLHWGTPVSLMQ*VRLVRKCISPRAQGIKRIIFHTVRPSFL 225
           VP YL ++    +++  VR+      P +QG KR++FH V P++L
Sbjct: 348 VPFYLYYYNLEENIVVRVRVE----VPESQGSKRVLFHAV-PNYL 387


>At4g19460.1 68417.m02862 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 516

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -1

Query: 389 VPHWHGVRLSVPSYLLHW-GTPVSLMQ*V---RLVRKCISPRAQGIKRIIFHTVRPSFL 225
           +PHW  +   VP+  + W G  +  +Q      L+RK   PR+QG    ++  V P  L
Sbjct: 210 LPHW--IAREVPNLAVSWHGIALESLQSSIYQDLIRKPDEPRSQGFNASLYGAVLPKIL 266


>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 666

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 212 PHSYPKPSLQRPLSPHITSHVRII 141
           PH +P P  QR +  H T+H  ++
Sbjct: 275 PHRHPPPVRQRNVKTHRTNHTPLV 298


>At4g23840.1 68417.m03428 leucine-rich repeat family protein
          Length = 597

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 224 KEKMDGLCERLYV*SLEHEGKCIYALALPIALVRPESPNAISKRARRDELR--ASVGLTR 397
           K+ + GLC+R     + HE     +L     L R  +P +  K ARR+  R  +SV + R
Sbjct: 495 KDDIAGLCKRYPHIKVRHEHADSSSLDQNQLLPRSSTPQSFGKVARRNNQRPESSVAVPR 554

Query: 398 A 400
           +
Sbjct: 555 S 555


>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
           putative strong similarity to cytosine-5
           methyltransferase (METII) [Arabidopsis thaliana]
           GI:6523846; contains Pfam profiles PF01426: BAH domain,
           PF00145: C-5 cytosine-specific DNA methylase
          Length = 1512

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 352 EGTERRTPCQCGTHPGVKA 408
           +GT RRT  +CG + G+KA
Sbjct: 903 KGTSRRTTLKCGRNVGLKA 921


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,198,445
Number of Sequences: 28952
Number of extensions: 182427
Number of successful extensions: 368
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)