Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C09
(368 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64090.1 68418.m08049 expressed protein 30 0.42
At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplas... 30 0.42
At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplas... 28 1.7
At1g07810.1 68414.m00846 calcium-transporting ATPase 1, endoplas... 28 2.2
At1g07670.1 68414.m00824 calcium-transporting ATPase 4, endoplas... 28 2.2
At3g63040.1 68416.m07081 expressed protein predicted protein, C.... 27 2.9
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 27 2.9
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ... 27 3.9
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate... 27 5.2
At5g45520.1 68418.m05591 hypothetical protein 26 6.8
At5g28140.1 68418.m03398 hypothetical protein 26 9.0
At4g31650.1 68417.m04495 transcriptional factor B3 family protei... 26 9.0
>At5g64090.1 68418.m08049 expressed protein
Length = 448
Score = 30.3 bits (65), Expect = 0.42
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +2
Query: 62 SDGLPRVWNPDFSLTSTVLRNYTISTGPASSIQSSQLSTQAIRQPSRPWWEVNVS*R*AI 241
S G P + S T ++ T T A+++ S A R P WWE R I
Sbjct: 8 SGGSPSPSSSTSSSTPHRFKSVTTPTATAAAVSGFSPSAAADRDPMHSWWESVSKQRSRI 67
Query: 242 LKLGEMM 262
L L ++
Sbjct: 68 LSLSSLL 74
>At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplasmic
reticulum-type (ACA6) (ECA3) nearly identical to
SP|Q9SY55 Calcium-transporting ATPase 3, endoplasmic
reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 998
Score = 30.3 bits (65), Expect = 0.42
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -1
Query: 230 FMRHLLPTT-GERVVVSLGWIIGMIESTTPVQCLWYNSV 117
F+R+++ + GE V + + ++G+ ++ PVQ LW N V
Sbjct: 749 FIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLV 787
>At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplasmic
reticulum-type (ECA2) nearly identical to SP|O23087
Calcium-transporting ATPase 2, endoplasmic
reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana};
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 1054
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 230 FMRHLLPTT-GERVVVSLGWIIGMIESTTPVQCLWYNSV 117
F+R+++ + GE + + L +G+ E PVQ LW N V
Sbjct: 785 FIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLV 823
>At1g07810.1 68414.m00846 calcium-transporting ATPase 1, endoplasmic
reticulum-type (ECA1) identical to SP|P92939
Calcium-transporting ATPase 1, endoplasmic
reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 1061
Score = 27.9 bits (59), Expect = 2.2
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 230 FMRHLLPTT-GERVVVSLGWIIGMIESTTPVQCLWYNSV--GP--LM*EKNPGSKHVVIR 66
F+R+++ + GE + L +G+ E PVQ LW N V GP NP K ++ +
Sbjct: 789 FIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDKDIMKK 848
Query: 65 P 63
P
Sbjct: 849 P 849
>At1g07670.1 68414.m00824 calcium-transporting ATPase 4, endoplasmic
reticulum-type (ECA4) identical to SP|Q9XES1
Calcium-transporting ATPase 4, endoplasmic
reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 775
Score = 27.9 bits (59), Expect = 2.2
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 230 FMRHLLPTT-GERVVVSLGWIIGMIESTTPVQCLWYNSV--GP--LM*EKNPGSKHVVIR 66
F+R+++ + GE + L +G+ E PVQ LW N V GP NP K ++ +
Sbjct: 503 FIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDKDIMKK 562
Query: 65 P 63
P
Sbjct: 563 P 563
>At3g63040.1 68416.m07081 expressed protein predicted protein,
C.elegans
Length = 187
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 224 RHLLPTTGERVVVSLGWIIGMIESTT 147
R ++PT + VV+SL W I ++ES T
Sbjct: 3 RGMIPTKAKVVVISLIWAILVLESAT 28
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 72 YHVFGTRIFLSHQRSYGIIP*ALDRRRRFNHPNYPPKRYDN 194
++ G + HQRS I P ++ RR+N P+ +R DN
Sbjct: 66 HNASGPPSYNHHQRSSNIGPPPPNQHRRYNAPDNQHQRSDN 106
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 105 HQRSYGIIP*ALDRRRRFNHPNYPPKRYDN 194
HQRS I P ++ RR+N P+ +R DN
Sbjct: 101 HQRSDNIGPPQPNQHRRYNAPDNQHQRSDN 130
>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 103 HINGPTELYHKH-WTGVVDSIIPIIHPSDTTTLSP 204
H+ P L++++ TG++ +IIP P ++ T P
Sbjct: 108 HLQHPLTLFYRNPETGIISNIIPYSSPYESDTSDP 142
>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; contains weak hit to
PF02178: AT hook motif
Length = 1678
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 86 NPDFSLTSTVLRNYTI 133
NPD +LT T ++NYT+
Sbjct: 1184 NPDLTLTETEIKNYTL 1199
>At5g45520.1 68418.m05591 hypothetical protein
Length = 1167
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 249 SFKIAYLYETFTSHHGREGCRIAW 178
SFK+ L E+ T G E +IAW
Sbjct: 524 SFKVESLMESLTGLQGLESLKIAW 547
>At5g28140.1 68418.m03398 hypothetical protein
Length = 212
Score = 25.8 bits (54), Expect = 9.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +3
Query: 3 LSCFSRVWMCRTVVVDNSVHR 65
+ CF W+C +V NS+ +
Sbjct: 60 MGCFKMSWLCEVQIVQNSLEK 80
>At4g31650.1 68417.m04495 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 493
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 82 LEPGFFSHINGPTELYHKHWTG 147
L PGF SHIN P + + K+ G
Sbjct: 18 LLPGFKSHINIPVKFFSKYIKG 39
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,628,829
Number of Sequences: 28952
Number of extensions: 151759
Number of successful extensions: 460
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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