Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C06
         (451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18050.1 68416.m02296 expressed protein                             29   1.9  
At5g55110.1 68418.m06870 stigma-specific Stig1 family protein si...    28   3.4  
At3g07550.2 68416.m00902 F-box family protein (FBL12) contains s...    28   3.4  
At3g07550.1 68416.m00901 F-box family protein (FBL12) contains s...    28   3.4  
At5g18430.1 68418.m02171 GDSL-motif lipase/hydrolase family prot...    27   4.4  
At3g58860.1 68416.m06560 F-box family protein contains F-box dom...    27   5.9  
At5g38396.1 68418.m04641 F-box family protein contains F-box dom...    27   7.7  
At3g59000.1 68416.m06576 F-box family protein contains F-box dom...    27   7.7  
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ...    27   7.7  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    27   7.7  
At2g40980.1 68415.m05062 expressed protein                             27   7.7  

>At3g18050.1 68416.m02296 expressed protein
          Length = 335

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 179 ETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPENLTYK-NADD 355
           ETDC +G+H  A G  P     G   C + L K+N  ++ G     +   N T K +  D
Sbjct: 193 ETDCLSGSHNNADGFSPL---LGCNKCLNSLYKLNPKKTSGTRNPSKEDRNRTAKMHNKD 249

Query: 356 C 358
           C
Sbjct: 250 C 250


>At5g55110.1 68418.m06870 stigma-specific Stig1 family protein
           similar to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 163

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 218 GLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRC 322
           GLC ++   G  CC      +   + H GEC  RC
Sbjct: 115 GLCKNKCKFGQTCCRGQCVYVAYDKRHCGECNHRC 149


>At3g07550.2 68416.m00902 F-box family protein (FBL12) contains
           similarity to F-box protein FBL6 GI:6456737 from [Homo
           sapiens]
          Length = 395

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 275 KINTCRSHGGECMDRCPENLTYKNADDCNIKNK 373
           KI+ C+S  G     C   L Y +AD C ++ K
Sbjct: 200 KISNCKSITGVGFSGCSPTLGYVDADSCQLEPK 232


>At3g07550.1 68416.m00901 F-box family protein (FBL12) contains
           similarity to F-box protein FBL6 GI:6456737 from [Homo
           sapiens]
          Length = 395

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 275 KINTCRSHGGECMDRCPENLTYKNADDCNIKNK 373
           KI+ C+S  G     C   L Y +AD C ++ K
Sbjct: 200 KISNCKSITGVGFSGCSPTLGYVDADSCQLEPK 232


>At5g18430.1 68418.m02171 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL1 GI:15054382 from
           [Arabidopsis thaliana]; contains Pfam profile PF00657:
           GDSL-like Lipase/Acylhydrolase
          Length = 362

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 189 VRLVLTSLRKVFVQVNSIGA*NVVIQF*GKL--TPADLTAGNAWTG 320
           VRL+++  +K+ +++NS+G   V++   G L   PA+L       G
Sbjct: 192 VRLLISEYKKILLRLNSLGVGRVLVTGAGPLGCAPAELARSGTSNG 237


>At3g58860.1 68416.m06560 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 457

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 347 HFYTSGSQDTCPCIPRREIGRC*FSLKLN 261
           H  T+   D C CIPR++ GR   +  +N
Sbjct: 348 HTVTNKCGDVCDCIPRKKKGRSLMACPVN 376


>At5g38396.1 68418.m04641 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 462

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 347 HFYTSGSQDTCPCIPRREIGR 285
           HF T    D C C+ R E GR
Sbjct: 362 HFVTDKCGDACDCVSREEKGR 382


>At3g59000.1 68416.m06576 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 491

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 347 HFYTSGSQDTCPCIPRREIGRC*FSLKLN 261
           H  T    D C C+PR + GR   S  +N
Sbjct: 364 HHVTDKCGDACDCVPREDKGRSLTSCPVN 392


>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 589

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 266 VLRKINTCRSHGGECMDRCPENLTYKNADD 355
           VLR  N+ R     C DRCP  + +K   D
Sbjct: 544 VLRNSNSTRPQCTRCGDRCPGYIYFKRKRD 573


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
           identical to auxin transport protein; BIG [Arabidopsis
           thaliana] GI:21779966; contains Pfam profiles PF02207:
           Putative zinc finger in N-recognin, PF00569: Zinc finger
           ZZ type
          Length = 5098

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 220 TFRSDVSTSRTVRFSFGTLPA 158
           TF++DVST++T+   +G L A
Sbjct: 855 TFQNDVSTAKTLNLDYGDLSA 875


>At2g40980.1 68415.m05062 expressed protein 
          Length = 617

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 248 VECCHSVLRKINTCRSHGGECMDRCPENLTY 340
           + CCH  L  +++  S G    D  PEN+ Y
Sbjct: 449 IRCCHDCLSALSSSSSAGIRHGDIRPENVVY 479


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,017,392
Number of Sequences: 28952
Number of extensions: 157134
Number of successful extensions: 372
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)