Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C02
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48175.1 68414.m05377 deaminase-related similar to tRNA-speci...    32   0.33 
At1g76160.1 68414.m08844 multi-copper oxidase type I family prot...    29   3.1  
At2g26690.1 68415.m03201 nitrate transporter (NTP2) identical to...    28   4.1  
At4g34270.1 68417.m04872 TIP41-like family protein contains Pfam...    27   7.1  

>At1g48175.1 68414.m05377 deaminase-related similar to tRNA-specific
           adenosine deaminase 2 (EC 3.5.4.-) (tRNA-specific
           adenosine-34 deaminase subunit TAD2) (Swiss-Prot:P47058)
           [Saccharomyces cerevisiae]
          Length = 122

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 374 VYFLNCQECVLFVTAFTFRCFHRLFYFCEGFYFHGCESCIRI 249
           V ++ C+ C++  +A +F     ++Y C    F GC S + +
Sbjct: 29  VLYVTCEPCIMCASALSFLGIKEVYYGCPNDKFGGCGSILSL 70


>At1g76160.1 68414.m08844 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 541

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +3

Query: 255 DARFAAVEIKSFAEVEQTVKTAKCECGDKEHAFLAIKEIDDXYYVVYSAPFTPNGLT 425
           D +   VE++    ++ T  +     G      +   +    YYVV S+ FT N LT
Sbjct: 230 DHKMKVVEVEGTHTLQTTFSSLDVHVGQSYSVLVTADQTPRDYYVVVSSRFTSNVLT 286


>At2g26690.1 68415.m03201 nitrate transporter (NTP2) identical to
           nitrate transporter (ntp2) [Arabidopsis thaliana]
           GI:4490321
          Length = 577

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 84  DKFLGRAVSIGISPNITELGTGCDWFTVTKVSEVH-CTC-DGRTNVP 218
           D FLGR  +IGI   I  LGTG      TK+ E+   TC  G   +P
Sbjct: 90  DSFLGRFKTIGIFSTIQALGTGA-LAVATKLPELRPPTCHHGEACIP 135


>At4g34270.1 68417.m04872 TIP41-like family protein contains Pfam
           PF04176: TIP41-like family; identical to cDNA putative
           cytoskeletal protein mRNA, partial cds GI:5031529
          Length = 290

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 273 VEIKSFAEVEQTVKTAKCECGDKEHAFLAIKEIDDXY--YVVYSAPFTPNGLTLIVLNAR 446
           VE K+  + E T++   CE    + A L++KE    Y   V+Y      NG++L+ +  R
Sbjct: 140 VEAKANPKGEATLQWENCE-DQIDLAALSLKEPILFYDEVVLYEDELADNGVSLLTVKVR 198

Query: 447 TIPT 458
            +P+
Sbjct: 199 VMPS 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,169,804
Number of Sequences: 28952
Number of extensions: 239717
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)