Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_B21
(265 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 139 3e-34
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 107 1e-24
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 107 1e-24
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 105 5e-24
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 83 2e-17
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 49 4e-07
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 49 4e-07
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 48 6e-07
At5g13650.2 68418.m01585 elongation factor family protein contai... 39 4e-04
At5g13650.1 68418.m01584 elongation factor family protein contai... 39 4e-04
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 31 0.14
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 31 0.14
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 30 0.18
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 0.32
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 0.32
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 0.56
At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein bet... 28 0.74
At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding ... 28 0.74
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 28 0.74
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 28 0.74
At4g36860.2 68417.m05227 LIM domain-containing protein low simil... 27 1.3
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 27 1.3
At5g04590.1 68418.m00458 sulfite reductase / ferredoxin (SIR) id... 27 1.7
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 27 1.7
At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein bet... 27 2.3
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 27 2.3
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 26 3.0
At1g30050.1 68414.m03674 hypothetical protein 26 3.0
At5g66840.1 68418.m08427 SAP domain-containing protein contains ... 26 3.9
At3g47050.1 68416.m05109 glycosyl hydrolase family 3 protein bet... 26 3.9
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p... 26 3.9
At1g75520.1 68414.m08776 lateral root primordium (LRP) protein-r... 26 3.9
At4g32020.1 68417.m04558 expressed protein NuLL 25 5.2
At1g78815.1 68414.m09187 expressed protein contains Pfam profile... 25 5.2
At1g68520.1 68414.m07827 zinc finger (B-box type) family protein... 25 5.2
At1g48780.1 68414.m05459 hypothetical protein 25 5.2
At3g57100.1 68416.m06357 hypothetical protein similar to At14a (... 25 6.9
At3g50530.1 68416.m05526 calcium-dependent protein kinase, putat... 25 6.9
At2g33430.1 68415.m04097 plastid developmental protein DAG, puta... 25 6.9
At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f... 25 9.1
At2g32270.1 68415.m03944 zinc transporter (ZIP3) identical to zi... 25 9.1
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa... 25 9.1
At1g56010.2 68414.m06428 transcription activator NAC1 (NAC1) con... 25 9.1
At1g56010.1 68414.m06427 transcription activator NAC1 (NAC1) con... 25 9.1
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 25 9.1
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 139 bits (336), Expect = 3e-34
Identities = 59/87 (67%), Positives = 75/87 (86%)
Frame = +1
Query: 4 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNES 183
+TA+PRL+EPVY+ EIQ PE A+GGIY VLN++RGHVFEE Q GTP++ +KAYLPV ES
Sbjct: 719 ITAKPRLLEPVYMVEIQAPEGALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES 778
Query: 184 FGFTADLRSNTGGQAFPQCVFDHWQIL 264
FGF++ LR+ T GQAFPQCVFDHW+++
Sbjct: 779 FGFSSQLRAATSGQAFPQCVFDHWEMM 805
>At1g06220.2 68414.m00656 elongation factor Tu family protein similar
to Cryptosporidium parvum elongation factor-2 GB:U21667
GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 107 bits (257), Expect = 1e-24
Identities = 53/87 (60%), Positives = 60/87 (68%)
Frame = +1
Query: 4 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNES 183
L A PRLMEPVY EIQ P V IY VL+RRRGHV + GTP ++VKA+LPV ES
Sbjct: 835 LMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLPVIES 894
Query: 184 FGFTADLRSNTGGQAFPQCVFDHWQIL 264
FGF DLR +T GQAF VFDHW I+
Sbjct: 895 FGFETDLRYHTQGQAFCLSVFDHWAIV 921
>At1g06220.1 68414.m00655 elongation factor Tu family protein similar
to Cryptosporidium parvum elongation factor-2 GB:U21667
GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 107 bits (257), Expect = 1e-24
Identities = 53/87 (60%), Positives = 60/87 (68%)
Frame = +1
Query: 4 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNES 183
L A PRLMEPVY EIQ P V IY VL+RRRGHV + GTP ++VKA+LPV ES
Sbjct: 835 LMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLPVIES 894
Query: 184 FGFTADLRSNTGGQAFPQCVFDHWQIL 264
FGF DLR +T GQAF VFDHW I+
Sbjct: 895 FGFETDLRYHTQGQAFCLSVFDHWAIV 921
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 105 bits (251), Expect = 5e-24
Identities = 52/87 (59%), Positives = 60/87 (68%)
Frame = +1
Query: 4 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNES 183
L A PRLMEPVY EIQ P V IY VL+RRRG+V + GTP ++VKA+LPV ES
Sbjct: 821 LMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGYVTSDVPQPGTPAYIVKAFLPVIES 880
Query: 184 FGFTADLRSNTGGQAFPQCVFDHWQIL 264
FGF DLR +T GQAF VFDHW I+
Sbjct: 881 FGFETDLRYHTQGQAFCLSVFDHWAIV 907
>At3g22980.1 68416.m02898 elongation factor Tu family protein similar
to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 83.4 bits (197), Expect = 2e-17
Identities = 36/88 (40%), Positives = 53/88 (60%)
Frame = +1
Query: 1 LLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNE 180
+L PR++E +Y CE+ +G +Y VL+RRR + +E G+ +F V AY+PV+E
Sbjct: 867 VLQTNPRIVEAMYFCELNTAPEYLGPMYAVLSRRRARILKEEMQEGSSLFTVHAYVPVSE 926
Query: 181 SFGFTADLRSNTGGQAFPQCVFDHWQIL 264
SFGF +LR T G A V HW++L
Sbjct: 927 SFGFADELRKGTSGGASALMVLSHWEML 954
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 49.2 bits (112), Expect = 4e-07
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = +1
Query: 10 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFG 189
A+P ++EPV L E++ P G + G +N+R+G + Q V+ A +P+N FG
Sbjct: 653 ARPVILEPVMLVELKVPTEFQGTVAGDINKRKGIIVGNDQEGDDS--VITANVPLNNMFG 710
Query: 190 FTADLRSNTGGQ 225
++ LRS T G+
Sbjct: 711 YSTSLRSMTQGK 722
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 49.2 bits (112), Expect = 4e-07
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = +1
Query: 10 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFG 189
A+P ++EPV L E++ P G + G +N+R+G + Q V+ A +P+N FG
Sbjct: 653 ARPVILEPVMLVELKVPTEFQGTVAGDINKRKGIIVGNDQEGDDS--VITANVPLNNMFG 710
Query: 190 FTADLRSNTGGQ 225
++ LRS T G+
Sbjct: 711 YSTSLRSMTQGK 722
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 48.4 bits (110), Expect = 6e-07
Identities = 26/73 (35%), Positives = 40/73 (54%)
Frame = +1
Query: 10 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFG 189
A PR++EP+ E+ PE +G + G LN RRG + G + VV + +P+ E F
Sbjct: 683 AGPRMLEPIMRVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPG-GLKVVDSLVPLAEMFQ 741
Query: 190 FTADLRSNTGGQA 228
+ + LR T G+A
Sbjct: 742 YVSTLRGMTKGRA 754
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 39.1 bits (87), Expect = 4e-04
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = +1
Query: 19 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFGFTA 198
+L+EP + ++ PE +G + +L +RRG +F+ V ++ +P G
Sbjct: 473 KLLEPYEIATVEVPEAHMGPVVELLGKRRGQMFDMQGVGSEGTTFLRYKIPTRGLLGLRN 532
Query: 199 DLRSNTGGQAFPQCVFDHW 255
+ + + G A VFD +
Sbjct: 533 AILTASRGTAILNTVFDSY 551
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 39.1 bits (87), Expect = 4e-04
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = +1
Query: 19 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFGFTA 198
+L+EP + ++ PE +G + +L +RRG +F+ V ++ +P G
Sbjct: 472 KLLEPYEIATVEVPEAHMGPVVELLGKRRGQMFDMQGVGSEGTTFLRYKIPTRGLLGLRN 531
Query: 199 DLRSNTGGQAFPQCVFDHW 255
+ + + G A VFD +
Sbjct: 532 AILTASRGTAILNTVFDSY 550
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 30.7 bits (66), Expect = 0.14
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 230 NACPPVLERRSAVNPNDSLTGRYAFTTNMGVPATCDSSNT 111
N+ P E + A NP+D L G TT V TC SN+
Sbjct: 3473 NSSLPKTEEKDAENPSDRLDGESDGTTVATVEGTCVESNS 3512
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 30.7 bits (66), Expect = 0.14
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 230 NACPPVLERRSAVNPNDSLTGRYAFTTNMGVPATCDSSNT 111
N+ P E + A NP+D L G TT V TC SN+
Sbjct: 3518 NSSLPKTEEKDAENPSDRLDGESDGTTVATVEGTCVESNS 3557
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 30.3 bits (65), Expect = 0.18
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 28 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNE-SFGFTADL 204
EP + I P VG + + + RRG E + + +F +K LP+ E F +L
Sbjct: 466 EPTVIATIILPSEYVGAVINLCSDRRGQQLEYTFIDAQRVF-LKYQLPLREIVVDFYDEL 524
Query: 205 RSNTGGQA 228
+S T G A
Sbjct: 525 KSITSGYA 532
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.5 bits (63), Expect = 0.32
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +2
Query: 116 SRSRKSPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSAS 244
SRSR S R STSRS P + + +P RRSRS S
Sbjct: 229 SRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRS 271
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.5 bits (63), Expect = 0.32
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +2
Query: 116 SRSRKSPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSAS 244
SRSR S R STSRS P + + +P RRSRS S
Sbjct: 229 SRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRS 271
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 28.7 bits (61), Expect = 0.56
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +2
Query: 116 SRSRKSPAHPCSW*RRTCPSTSRSGSPPTC----APTPEGRRSRSAS 244
+R +SP P R P R SPP +P+P RR RS S
Sbjct: 337 ARRHRSPTPPARQRRSPSPPARRHRSPPPARRRRSPSPPARRRRSPS 383
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 173 STSRSGSPPTC--APTPEGRRSRSASSITGR 259
S SRS SPP +P+P GR+ + GR
Sbjct: 616 SPSRSRSPPVLHRSPSPRGRKHQRERRSPGR 646
>At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 608
Score = 28.3 bits (60), Expect = 0.74
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 218 PVLERRSAVNPNDSLTGRYAFTTNMGVPATCDSSNTCPRRLFSTP*IPPTATSGHW 51
P++ AV+ N+++ G F N+G+ AT D+ RR+ + + A+ HW
Sbjct: 94 PIIYGTDAVHGNNNVYGATVFPHNIGLGATRDAD--LVRRIGAATALEVRASGVHW 147
>At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding
protein, putative (SR1) identical to partial sequence of
ethylene-induced calmodulin-binding protein GI:11545505
from [Arabidopsis thaliana]; contains Pfam profiles
PF03859: CG-1 domain, PF00612: IQ calmodulin-binding
motif, and PF00023: Ankyrin repeat
Length = 1032
Score = 28.3 bits (60), Expect = 0.74
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -2
Query: 135 GDLRLLEHVPAPSVQHAVDTTDRHLRTLDLAKVHGFHKPGL 13
GD EH S + H +T D A V+GFH P L
Sbjct: 161 GDALTSEHDGYASCSFNQNDHSNHSQTTDSASVNGFHSPEL 201
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 28.3 bits (60), Expect = 0.74
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 116 SRSRKSPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSASSITGRS 262
SR R+SP+ S R + S SRSGS P+ + + RSRS SS + S
Sbjct: 5 SRGRRSPSVSGSSSRSS--SRSRSGSSPSRSISRSRSRSRSLSSSSSPS 51
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 28.3 bits (60), Expect = 0.74
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 116 SRSRKSPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSASSITGRS 262
SR R+SP+ S R + S SRSGS P+ + + RSRS SS + S
Sbjct: 5 SRGRRSPSVSGSSSRSS--SRSRSGSSPSRSISRSRSRSRSLSSSSSPS 51
>At4g36860.2 68417.m05227 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 547
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 137 AHPCSW*RRTCPSTSRSGSPPTCA 208
AHP W ++ CPS R G+P C+
Sbjct: 260 AHPF-WMQKYCPSHERDGTPRCCS 282
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 137 AHPCSW*RRTCPSTSRSGSPPTCA 208
AHP W ++ CPS R G+P C+
Sbjct: 64 AHPF-WMQKYCPSHERDGTPRCCS 86
>At5g04590.1 68418.m00458 sulfite reductase / ferredoxin (SIR)
identical to sulfite reductase [Arabidopsis thaliana]
GI:804953, GI:2584721
Length = 642
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 212 LERRSAVNPNDSL-TGRYAFTTNMGVPATCDSSNTCPRRLFSTP*IPPTAT 63
L R A+ + S+ GRY + VP + SS++ P + STP P TAT
Sbjct: 23 LGRLDALRSSHSVFLGRYG-RGGVPVPPSASSSSSSPIQAVSTPAKPETAT 72
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 27.1 bits (57), Expect = 1.7
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +2
Query: 107 GTCSRSRKSPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSASSITGRS 262
GT R KS + RR+ RS SP +P P RRS S GRS
Sbjct: 119 GTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRS 170
>At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 581
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -3
Query: 218 PVLERRSAVNPNDSLTGRYAFTTNMGVPATCDSSNTCPRRLFSTP*IPPTATSGHW 51
P++ AV+ N+++ G F N+G+ AT D+ +R+ + + A+ HW
Sbjct: 67 PIIYGTDAVHGNNNVYGATVFPHNIGLGATRDAD--LVKRIGAATALEIRASGVHW 120
>At3g19050.1 68416.m02420 kinesin motor protein-related contains
Pfam profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 110 TCSRSRKSPAHPCSW*RRTCPSTSRSGSPPTCAP--TPEGRRSRSASS 247
T + S K+P H C PS R+ +P P TP+ RS +A S
Sbjct: 34 TSNDSLKNPKHECGSKIDRTPSKPRAKNPDPALPLRTPDKYRSAAAFS 81
>At2g17250.1 68415.m01992 expressed protein weak similarity to
Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
[Saccharomyces cerevisiae]
Length = 577
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/54 (25%), Positives = 19/54 (35%)
Frame = +1
Query: 4 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAY 165
LT P L P LC+ +GG+ V+ + P F K Y
Sbjct: 307 LTVIPHLSNPTMLCDFLTKSYDIGGVVSVMALSSLFILMTQHGLEYPFFYEKLY 360
>At1g30050.1 68414.m03674 hypothetical protein
Length = 389
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 79 YHRPPPPDTGSRKG 38
YH+PP PD G KG
Sbjct: 20 YHQPPDPDHGDLKG 33
>At5g66840.1 68418.m08427 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 551
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 170 PSTSRSGSPPTCAPTPEGRRS 232
P RS +PPT AP P RS
Sbjct: 342 PHAPRSHAPPTYAPRPHAPRS 362
>At3g47050.1 68416.m05109 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 612
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -3
Query: 218 PVLERRSAVNPNDSLTGRYAFTTNMGVPATCDSSNTCPRRLFSTP*IPPTATSGHW 51
P++ AV+ N+ + G F N+G+ AT D+ +R+ + + A HW
Sbjct: 94 PIIYGIDAVHGNNDVYGATIFPHNIGLGATRDAD--LVKRIGAATALEVRACGAHW 147
>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
protease, putative contains similarity to cysteine
proteinase RD21A (thiol protease) GI:435619, SP:P43297
from [Arabidopsis thaliana]
Length = 452
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 137 PATCDSSNTCPRR 99
P CD SNTCP +
Sbjct: 360 PVVCDKSNTCPAK 372
>At1g75520.1 68414.m08776 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 346
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 141 THVRGEGVPARQRVVRVHRRPALQHRRA 224
THV+ VPA +R R+ + +LQH A
Sbjct: 154 THVKSTWVPAAKRRERLAQLASLQHHSA 181
>At4g32020.1 68417.m04558 expressed protein NuLL
Length = 181
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 158 RRTCP--STSRSGSPPTCAPTPEGRRSRSA 241
RR+ P +SRS SPP P P R + SA
Sbjct: 42 RRSPPRSQSSRSSSPPVAPPLPPPRAAVSA 71
>At1g78815.1 68414.m09187 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 195
Score = 25.4 bits (53), Expect = 5.2
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = +3
Query: 9 RAAQAYGTRVPLRDPVSGGGGRWYLRRAEQTXXXXXXXXXXXXHTHVRGEGVPARQRVVR 188
RAA +P R+P +GGG R +LR + + GVP ++R R
Sbjct: 124 RAAFEENGGLPERNPFAGGGIRVFLREVRD--------------SQAKARGVPYKKRKKR 169
Query: 189 VHRRPALQH 215
R P H
Sbjct: 170 KKRNPMKSH 178
>At1g68520.1 68414.m07827 zinc finger (B-box type) family protein
contains Pfam profile: PF00643 B-box zinc finger
Length = 406
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -2
Query: 213 VGAQVGGEPERLVDGQVRLHHEHGCAGDLRLLEHVPAPSVQHAVDTTDRHLR 58
+ + VGG+ R D V+ CA D L H SV A RH R
Sbjct: 5 LASAVGGKTARACDSCVKRRARWYCAADDAFLCHACDGSVHSANPLARRHER 56
>At1g48780.1 68414.m05459 hypothetical protein
Length = 251
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -3
Query: 200 SAVNPNDSLTGRYAFTTNMGVPATCDSSNTCPRRLFSTP*IPPTATS 60
++ +P DS F M +P +++T P+RL+ +PP +S
Sbjct: 53 NSFDPGDSSPADEIFADGMILPFHVTAASTVPKRLYKYE-LPPITSS 98
>At3g57100.1 68416.m06357 hypothetical protein similar to At14a
(GI:11994571 and GI:11994573) [Arabidopsis thaliana];
contains Pfam PF05055 : Protein of unknown function
(DUF677); contains Prosite PS00453: FKBP-type
peptidyl-prolyl cis-trans isomerase signature 1;
contains one transmembrane domain
Length = 359
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 158 FTTNMGVPATCDSSNTCPRR 99
FTT+ GV C+S TC R
Sbjct: 91 FTTSKGVSQLCESLRTCLER 110
>At3g50530.1 68416.m05526 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK3 [Nicotiana tabacum]
gi|16904226|gb|AAL30820
Length = 601
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 137 PATCDSSNTCPRRLFSTP*IPPTATSGH 54
PAT +S+N+ P+R F P PP + + H
Sbjct: 77 PAT-NSTNSTPKRFFKRP-FPPPSPAKH 102
>At2g33430.1 68415.m04097 plastid developmental protein DAG,
putative similar to DAG protein, chloroplast precursor
[Garden snapdragon] SWISS-PROT:Q38732
Length = 219
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 163 YLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL 264
Y P+N F+ D FP C ++HW I+
Sbjct: 58 YSPLNSGSNFS-DRPPTEMAPLFPGCDYEHWLIV 90
>At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N)
family protein similar to SP|Q9RHV9 Lysyl-tRNA
synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus
stearothermophilus}; contains Pfam profile: PF00152 tRNA
synthetases class II (D, K and N)
Length = 602
Score = 24.6 bits (51), Expect = 9.1
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 161 RTCPSTSRSGSPPTCAPT--PEGRRSRSASSITGRS 262
R + S S S T A T P GR RSASS S
Sbjct: 44 RCASAASSSSSSATTAETSKPSGRNRRSASSSNSTS 79
>At2g32270.1 68415.m03944 zinc transporter (ZIP3) identical to zinc
transporter [Arabidopsis thaliana]
gi|3252870|gb|AAC24199; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 339
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 58 PEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAY 165
P V + GI GVL G VF + FV KA+
Sbjct: 59 PTVLIAGIIGVLFPLLGKVFPSLRPETCFFFVTKAF 94
>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 683
Score = 24.6 bits (51), Expect = 9.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 183 RLVDGQVRLHHEHGCAGDLRLLEHVPAPSVQHAVDTTDRHLRTLD 49
R V RL + +G RLL A VQH + ++D +R LD
Sbjct: 580 RAVAESRRLIERNHYSGAHRLLTSARALLVQHGLSSSDACIRGLD 624
>At1g56010.2 68414.m06428 transcription activator NAC1 (NAC1)
contains Pfam PF02365: No apical meristem (NAM) domain;
identical to NAC1 GB:AAF21437 GI:6649236 from
[Arabidopsis thaliana]
Length = 324
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3
Query: 191 NPNDSLTGRYAFTTNMGVPATCDSSNTCPRRLFS 90
NPN TG A T G+ + C S R L S
Sbjct: 253 NPNPLFTGGSASATLTGLDSFCSSDQMVLRALLS 286
>At1g56010.1 68414.m06427 transcription activator NAC1 (NAC1)
contains Pfam PF02365: No apical meristem (NAM) domain;
identical to NAC1 GB:AAF21437 GI:6649236 from
[Arabidopsis thaliana]
Length = 257
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3
Query: 191 NPNDSLTGRYAFTTNMGVPATCDSSNTCPRRLFS 90
NPN TG A T G+ + C S R L S
Sbjct: 186 NPNPLFTGGSASATLTGLDSFCSSDQMVLRALLS 219
>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
to gi_3883128_gb_AAC77827
Length = 133
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 158 RRTCPSTSRSGSPPTCAPT 214
R T P+ S S +PP APT
Sbjct: 44 RATAPAPSPSANPPPSAPT 62
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,576,595
Number of Sequences: 28952
Number of extensions: 130851
Number of successful extensions: 537
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 66
effective length of database: 10,159,728
effective search space used: 213354288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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