Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B16
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    31   0.70 
At4g38340.1 68417.m05420 RWP-RK domain-containing protein simila...    30   1.2  
At2g33780.1 68415.m04143 VQ motif-containing protein contains PF...    29   3.7  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    29   3.7  
At5g59700.1 68418.m07484 protein kinase, putative similar to rec...    28   4.9  
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    28   4.9  
At1g28520.1 68414.m03506 expressed protein                             28   4.9  
At1g05370.1 68414.m00544 expressed protein                             28   4.9  
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila...    28   6.5  
At3g09780.1 68416.m01161 protein kinase family protein contains ...    28   6.5  
At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putati...    27   8.6  
At4g08370.1 68417.m01382 proline-rich extensin-like family prote...    27   8.6  
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex...    27   8.6  

>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 498 PTSYMRGPPESPLHASSPGLPPAHSC 421
           P  +   PP SP+H SSP  PP+  C
Sbjct: 675 PEVHYHSPPPSPVHYSSPPPPPSAPC 700



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 498 PTSYMRGPPESPLHASSPGLPPAH 427
           P  Y   PP  P+H SSP  P  H
Sbjct: 655 PVYYSSPPPPPPVHYSSPPPPEVH 678


>At4g38340.1 68417.m05420 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 767

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -1

Query: 486 MRGPPESPLHASSPGLPPAHSCSL--VI--TSASPPRNVLCAA*HLSLSTYGSLTCCL 325
           M GP +  LHA +   PP+ S SL  V+  +S    R +L    HLSLS + + + CL
Sbjct: 1   MVGPFKKILHAHNQRFPPSSSSSLDPVVDDSSRKQTRIILSYLLHLSLSLHITYSLCL 58


>At2g33780.1 68415.m04143 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 204

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 525 TDPTITKVLPTSYMRGPPESPLHASSPGLPPAHS 424
           TDP+  K +    + G P++P H   P  PP HS
Sbjct: 41  TDPSSFKQV-VQLLTGIPKNPTHQPDPRFPPFHS 73


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 519 PTITKVLPTSYMRGP--PESPLHASSPGLPPAHSCSLVITSASPP 391
           P  T   P S  + P  P +P  A +P  PPA   + VI+ A+PP
Sbjct: 53  PPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPP 97


>At5g59700.1 68418.m07484 protein kinase, putative similar to
           receptor-like protein kinase [Catharanthus roseus]
           gi|1644291|emb|CAA97692
          Length = 829

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 267 SPVGECTSSSYLALVCRVQLNNTLNSHM----LIETDVKQRKGHCVGA 398
           S +G C  ++ + LV     N TL SH+    L+    KQR   C+G+
Sbjct: 540 SLIGYCDENNEMILVYEYMENGTLKSHLYGSGLLSLSWKQRLEICIGS 587


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 498 PTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 391
           P   +  PP  P+++  P  PP HS    + S  PP
Sbjct: 543 PPPPVHSPPPPPVYSPPPPPPPVHSPPPPVFSPPPP 578


>At1g28520.1 68414.m03506 expressed protein
          Length = 486

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 23  NTTNNGPDCMKGTKDCAHPVVTAPIEKTI 109
           NTTNN   C+KG    +  V T  ++ T+
Sbjct: 433 NTTNNNKRCIKGRPKVSTKVATGNVQNTV 461


>At1g05370.1 68414.m00544 expressed protein
          Length = 439

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 255 LKCTSPVGECTSSSYLALVCRVQLNNTLNSHMLIETDVKQRK-GHCVGA 398
           LK T  +G C SS +   V R  L +T+    L  TD    K GH  GA
Sbjct: 264 LKSTDKIGSCASSRFAFTVSRDGL-DTVKPWCLTLTDTSSTKLGHNTGA 311


>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar
           to SP|P35207 Antiviral protein SKI2 {Saccharomyces
           cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 1347

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 59  TKDCAHPVVTAPIEKTIPHPDYIPNDVQGRHDIALI 166
           TK C   V TAPI KTI +  Y   D  G+ D+ L+
Sbjct: 391 TKHCTRAVYTAPI-KTISNQKY--RDFCGKFDVGLL 423


>At3g09780.1 68416.m01161 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 775

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = -2

Query: 638 CSHYFRLLLYFLSMVCTRKRSYIRRGCSLCRNIS 537
           CSH F     FLS  CT     I   CSLC+N S
Sbjct: 388 CSHGF-----FLSSSCTANSDRICTPCSLCQNSS 416


>At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650207]
           [PMID: 11247608] Contains Pfam domain PF00432:
           Prenyltransferase and squalene oxidase repeat
          Length = 758

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 163 KRNVMSALHIVGDVIWMWNSFFYRSSNNGMCTVFGTFHAVRTIV 32
           KR +  A   + D+  +  S++    N G+C ++GTF AVR +V
Sbjct: 586 KRFITKAAKYIEDMQTVDGSWY---GNWGVCFIYGTFFAVRGLV 626


>At4g08370.1 68417.m01382 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 350

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
 Frame = -1

Query: 501 LPTSYM-RGPPESPLHASSPGLPPAHSCSLVITSASPPRNVLCAA*HLSLSTYGSLTCCL 325
           LP+ Y+ + PP SP   SSP  PP      V  S  PP   +  +       Y S     
Sbjct: 46  LPSPYVYKSPPPSPYLYSSPPPPP-----YVYNSPPPPPPYIYNSPPRPPYVYKSPPPPP 100

Query: 324 TVLDKPVPDMNCLYIPQPATYISKS 250
            V   P P       P P  Y+ KS
Sbjct: 101 FVYSSPPPPTYIYNSPPPPPYVYKS 125


>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 494

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -1

Query: 567 PGMFLVPQYFGP*LTDPTITKVLPTSYMRGPPESPLHASSPGLPPAHSCS 418
           P   L P  + P  + P  +          PP   +H SSP  PP H  S
Sbjct: 416 PSPPLPPPVYSPPPSPPVFSPPPSPPVYSPPPPPSIHYSSPPPPPVHHSS 465


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,085,457
Number of Sequences: 28952
Number of extensions: 419172
Number of successful extensions: 1315
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)