Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B11
         (243 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12270.1 68417.m01944 copper amine oxidase family protein con...    27   2.3  
At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containi...    26   3.0  
At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger) fa...    25   5.3  
At2g41240.2 68415.m05093 basic helix-loop-helix (bHLH) family pr...    25   5.3  
At2g41240.1 68415.m05092 basic helix-loop-helix (bHLH) family pr...    25   5.3  
At1g78950.1 68414.m09204 beta-amyrin synthase, putative similar ...    25   5.3  
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat...    25   7.0  
At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) / flav...    25   7.0  
At1g78960.1 68414.m09206 lupeol synthase, putative / 2,3-oxidosq...    25   7.0  
At1g73130.1 68414.m08456 expressed protein                             25   7.0  
At5g62570.1 68418.m07852 calmodulin-binding protein similar to c...    25   9.3  
At5g57150.1 68418.m08531 basic helix-loop-helix (bHLH) family pr...    25   9.3  
At1g61310.1 68414.m06910 disease resistance protein (CC-NBS-LRR ...    25   9.3  
At1g61180.1 68414.m06894 disease resistance protein (CC-NBS-LRR ...    25   9.3  

>At4g12270.1 68417.m01944 copper amine oxidase family protein
           contains similarity to copper amine oxidase [Cicer
           arietinum] gi|3819099|emb|CAA08855; contains Pfam
           domains PF02728: Copper amine oxidase, N3 domain and
           PF02727: Copper amine oxidase, N2 domain
          Length = 460

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 224 PSAAQMTF--TVSSSVLFCISRNFVSGTNT 141
           PS+    F  T SSS  FC SRNF+   NT
Sbjct: 31  PSSTAKLFDCTKSSSSPFCASRNFLFNKNT 60


>At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 408

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 100 STFMDEDSKTKQMTVFVPETKFRLIQNKTDDDTVNVICAAEGVYP 234
           ST +  DSKT   +    +    L++++ D D +  IC A  + P
Sbjct: 30  STILSPDSKTPLTSKEKSKAALSLLKSEKDPDRILEICRAASLTP 74


>At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 226

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 183 LILYQPELRLRHEH 142
           ++ YQP LR+RHE+
Sbjct: 50  IVTYQPNLRIRHEN 63


>At2g41240.2 68415.m05093 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 241

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 234 GIHSFRRTDDVHRVIIRLILYQPELRLRHEH 142
           G HSF  TDDV    +   L  P+L + HE+
Sbjct: 17  GDHSFYETDDVSNTFLDFPL--PDLTVTHEN 45


>At2g41240.1 68415.m05092 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 242

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 234 GIHSFRRTDDVHRVIIRLILYQPELRLRHEH 142
           G HSF  TDDV    +   L  P+L + HE+
Sbjct: 17  GDHSFYETDDVSNTFLDFPL--PDLTVTHEN 45


>At1g78950.1 68414.m09204 beta-amyrin synthase, putative similar to
           beta-Amyrin Synthase GI:3688600 from [Panax ginseng] and
           GI:8918271 from [Pisum sativum]
          Length = 759

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 10  RASSDPLKMHRALRIIKTNTDISGDY 87
           +A  DP+ +HRA ++I  +   SGD+
Sbjct: 695 QAERDPIPLHRAAKLIINSQLESGDF 720


>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
           acid multifunctional protein (AIM1) identical to
           gi:4337025; contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 721

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +1

Query: 40  RALRIIKTNTDISGDYTCVVSTFMDEDSKTKQMTVFVPETKFRLIQNKTDDDTVNVICAA 219
           +A+ +I  N   SG +   ++ F  +  KT  +++ +PE    L+ N  +D    V+ A 
Sbjct: 51  KAIVLIGNNGRFSGGFD--INVFQ-QVHKTGDLSL-MPEVSVELVCNLMEDSRKPVVAAV 106

Query: 220 EGV 228
           EG+
Sbjct: 107 EGL 109


>At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) /
           flavin-type blue-light photoreceptor (HY4) contains Pfam
           PF03441: FAD binding domain of DNA photolyase; member of
           Pfam PF00875: deoxyribodipyrimidine photolyase
           superfamily; 99% identical to Cryptochrome 1 apoprotein
           (Blue light photoreceptor) (flavin-type blue-light
           photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
          Length = 681

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 127 TKQMTVFVPETKFRLIQNKTDDDT 198
           + Q+T  +PE   R++   T+D T
Sbjct: 598 SNQVTAMIPEFNIRIVAESTEDST 621


>At1g78960.1 68414.m09206 lupeol synthase, putative /
           2,3-oxidosqualene-triterpenoid cyclase, putative similar
           to lupeol synthase GI:1762150 from [Arabidopsis
           thaliana], 2,3-oxidosqualene-triterpenoid cyclase
           [Arabidopsis thaliana] GI:2738027
          Length = 763

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 10  RASSDPLKMHRALRIIKTNTDISGDY 87
           +A  DP  +HRA ++I T+   +GD+
Sbjct: 695 QAERDPTPLHRAAKLIITSQLENGDF 720


>At1g73130.1 68414.m08456 expressed protein
          Length = 646

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/51 (25%), Positives = 19/51 (37%)
 Frame = +1

Query: 52  IIKTNTDISGDYTCVVSTFMDEDSKTKQMTVFVPETKFRLIQNKTDDDTVN 204
           ++K N    G     +  F D DS    +   VP+   R       DD +N
Sbjct: 470 VVKCN---DGPVLAALGCFRDNDSSLNPLVTKVPDENMRSSNADNPDDVIN 517


>At5g62570.1 68418.m07852 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 487

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 106 FMDEDSKTKQMTVFVPETKFRLIQNKTDDD-TVNVICAAEGVYPAPN 243
           F    + + ++ VFV E  F  + + TD+D   N++   EG  P  N
Sbjct: 92  FSSGPASSAKLEVFVVEGDFNSVSDWTDEDIRNNIVREREGKKPLLN 138


>At5g57150.1 68418.m08531 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 247

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 14/57 (24%), Positives = 31/57 (54%)
 Frame = -2

Query: 212 QMTFTVSSSVLFCISRNFVSGTNTVICFVFESSSIKVDTTQV*SPEISVFVLIMRKA 42
           ++TF    +++  ++ N  + T   +C VFES ++K+ T+ + S    +F  +  +A
Sbjct: 158 KVTFMGERTMVVSVTCNKRTDTMVKLCEVFESLNLKILTSNLTSFSGMIFHTVFIEA 214


>At1g61310.1 68414.m06910 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 925

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 118 DSKTKQMTVFVPETKFRLIQNKTDDDTVN 204
           D K  Q+    PE  + L +NK  D+T++
Sbjct: 302 DHKPMQVNCLEPEDAWELFKNKVGDNTLS 330


>At1g61180.1 68414.m06894 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 889

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 118 DSKTKQMTVFVPETKFRLIQNKTDDDTVN 204
           D K  Q+    PE  + L +NK  D+T++
Sbjct: 300 DHKPMQVNCLEPEDAWELFKNKVGDNTLS 328


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,666,682
Number of Sequences: 28952
Number of extensions: 79734
Number of successful extensions: 239
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,070,560
effective HSP length: 59
effective length of database: 10,362,392
effective search space used: 217610232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)