Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A13
         (379 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15820.1 68415.m01814 pentatricopeptide (PPR) repeat-containi...    31   0.34 
At3g13680.1 68416.m01727 F-box family protein contains F-box dom...    29   1.4  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    28   1.8  
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ...    27   4.1  
At1g75150.1 68414.m08729 expressed protein ; expression supporte...    27   5.5  
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident...    27   5.5  
At3g59330.1 68416.m06615 anthocyanin-related membrane protein fa...    26   7.2  
At3g50380.1 68416.m05511 expressed protein                             26   7.2  
At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r...    26   7.2  
At2g42470.1 68415.m05254 meprin and TRAF homology domain-contain...    26   9.6  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    26   9.6  

>At2g15820.1 68415.m01814 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profiles PF01535: PPR repeat,
           PF03161 LAGLIDADG DNA endonuclease family
          Length = 547

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 369 VLKVDIHSSSFVFVYPFESSSHDLTPFEAFVIDNKPFGY 253
           VLK +IH     +++P  +   D+ PFE + + +  FG+
Sbjct: 367 VLKQNIHDQFREWLHPLSNFQEDIIPFEFYSVPHSYFGF 405


>At3g13680.1 68416.m01727 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 395

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 272 ITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFL 159
           +TSL AI ST Q+    SKS IC  + ++   K   F+
Sbjct: 21  LTSLRAIRSTCQKWNSLSKSQICGRKATAAENKFLGFM 58


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
           identical to ubiquitin-protein ligase 1 [Arabidopsis
           thaliana] GI:7108521; E3, HECT-domain protein family;
           similar to GI:7108521, GB:AAF36454 from [Arabidopsis
           thaliana]
          Length = 3891

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 115 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRL 216
           N++ F    G  EFV +++  V YED + E IR+
Sbjct: 534 NVVSF--FNGEPEFVNELVTLVSYEDTVPEKIRI 565


>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 675

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +2

Query: 164 KCSPSWYTKTSLKNILGSLKHVESAGRSNG*PKGLLSITKASNGVRSWLLDSNGYTKTKE 343
           K +PS + ++SL + +      ESA    G      ++ K++  V + +  ++G   +K 
Sbjct: 604 KTTPSSHIQSSLLSAMKLAAEFESAKVERGNNDPTEAVNKSNVTVDTAVTRNSGNISSKI 663

Query: 344 LEWISTFS 367
           LE++S+FS
Sbjct: 664 LEFLSSFS 671


>At1g75150.1 68414.m08729 expressed protein ; expression supported
           by MPSS
          Length = 753

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 372 EVLKVDIHSSSFVFVYPFESSSHDLTPFEAFVIDNKP 262
           E+LK+    +SF       SS+H  + F AF +D KP
Sbjct: 705 EILKMSSKKTSFNSRETMISSNHTESIFAAFKLDKKP 741


>At1g50030.1 68414.m05614 target of rapamycin protein (TOR)
           identical to pTOR [Arabidopsis thaliana] GI:12002902;
           contains Pfam profiles PF00454 Phosphatidylinositol 3-
           and 4-kinase, PF02259 FAT domain, PF02260 FATC domain
          Length = 2481

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 190 DILKEHIRLFEARRVRWTVEWIAKRLVINNKGL 288
           + L+  +R+ E R  RW V+W  +       GL
Sbjct: 231 EALRACLRVIEKRETRWRVQWYYRMFEATQDGL 263


>At3g59330.1 68416.m06615 anthocyanin-related membrane protein
           family similar to anthocyanin-related membrane protein 1
           (GI:16416383),  anthocyanin-related membrane protein 2
           (GI:16416385), anthocyanin-related membrane protein 3
           (GI:16416387) [Arabidopsis thaliana]
          Length = 241

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 372 EVLKVDIHSSSFVFVYPFESSSHDLTPFEAFVIDNKPFGYPF 247
           E+ + D  S  F   +P    SH+LT FE F+  N P    F
Sbjct: 37  EIARKDF-SFFFFSNHPIFKHSHELTKFEIFIGINAPTSQSF 77


>At3g50380.1 68416.m05511 expressed protein
          Length = 3071

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 190 DILKEHIRLFEARRVRWTVEWIAKRLVINNKG 285
           DI+ E+  LF    + W +EW  K LV +  G
Sbjct: 661 DIVFEYSSLFSLALLIWQIEWAQKLLVDDYTG 692


>At1g23935.1 68414.m03020 apoptosis inhibitory protein 5
           (API5)-related contains weak hit to Pfam profile
           PF05918: Apoptosis inhibitory protein 5 (API5)
          Length = 660

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 244 VEWIAKRLVINNKGLKWCQIMATRFKRIYENKRTGMDIHLQY 369
           VE + K+ ++    L + Q+M T  K IY+   + M +++ Y
Sbjct: 479 VEALQKQQIVGADLLNYSQLMMTSGKYIYKGPMSRMSVYVGY 520


>At2g42470.1 68415.m05254 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein contains Pfam
           profile PF00917: MATH domain
          Length = 898

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -3

Query: 287 RPLLLITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPMMFLN 108
           R LLL   +L +   + RTRR + +L C         + S +  + T PL+ L+   FL 
Sbjct: 297 RVLLLEKEVLDLKIELDRTRREACNLFC--------PEVSNWCFSKTLPLSKLQEKGFLE 348

Query: 107 NKR 99
           N +
Sbjct: 349 NNK 351


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
           identical to ubiquitin-protein ligase 2 [Arabidopsis
           thaliana] GI:7108523; E3, HECT-domain protein family;
           similar to ubiquitin-protein ligase 2 GI:7108523 from
           [Arabidopsis thaliana]
          Length = 3658

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 115 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRL 216
           N++ F    G  EFV +++  V YED +   IR+
Sbjct: 285 NVVSF--FNGEPEFVNELVTLVSYEDTVPAKIRI 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,842,984
Number of Sequences: 28952
Number of extensions: 157232
Number of successful extensions: 401
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)