Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A04
         (311 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47330.1 68418.m05834 palmitoyl protein thioesterase family p...    52   1e-07
At4g17470.1 68417.m02613 palmitoyl protein thioesterase family p...    52   1e-07
At5g47340.1 68418.m05835 palmitoyl protein thioesterase family p...    51   2e-07
At4g17480.1 68417.m02614 palmitoyl protein thioesterase family p...    50   3e-07
At4g17483.1 68417.m02615 palmitoyl protein thioesterase family p...    48   2e-06
At3g60340.2 68416.m06746 palmitoyl protein thioesterase family p...    46   7e-06
At3g60340.1 68416.m06745 palmitoyl protein thioesterase family p...    46   7e-06
At5g47350.1 68418.m05836 palmitoyl protein thioesterase family p...    42   1e-04
At5g44930.2 68418.m05510 exostosin family protein contains Pfam ...    26   6.1  
At5g44930.1 68418.m05509 exostosin family protein contains Pfam ...    26   6.1  
At5g09930.1 68418.m01148 ABC transporter family protein                26   6.1  

>At5g47330.1 68418.m05834 palmitoyl protein thioesterase family
           protein 
          Length = 314

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 20/52 (38%), Positives = 37/52 (71%)
 Frame = +3

Query: 21  ILTLQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLRFTDQWMISEIINPYL 176
           +L+ Q++ +YT+D +GLK +D  GK+ F+S  G+H+R  D+ ++  ++ PYL
Sbjct: 244 LLSAQQTKLYTEDWIGLKTLDDAGKVKFVSVAGEHIRMVDEDVVKHVV-PYL 294


>At4g17470.1 68417.m02613 palmitoyl protein thioesterase family
           protein
          Length = 308

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 21/54 (38%), Positives = 37/54 (68%)
 Frame = +3

Query: 21  ILTLQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLRFTDQWMISEIINPYLVN 182
           +L  Q++ +YT+D +GLK +D  GK+ F+S PG H+  T++ ++  ++ PYL N
Sbjct: 245 VLPPQKTKLYTEDWIGLKTLDDAGKVRFISVPGGHIEITEEDLVKYVV-PYLQN 297


>At5g47340.1 68418.m05835 palmitoyl protein thioesterase family
           protein 
          Length = 317

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 21/56 (37%), Positives = 38/56 (67%)
 Frame = +3

Query: 21  ILTLQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLRFTDQWMISEIINPYLVN*Q 188
           +L+  ++ +YT+D +GLK +D  GK+ F+S PG H+R  ++ ++  ++ PYL N Q
Sbjct: 247 LLSANQTKLYTEDWIGLKTLDDAGKVKFVSVPGGHVRMAEEDVVKYVV-PYLQNQQ 301


>At4g17480.1 68417.m02614 palmitoyl protein thioesterase family
           protein
          Length = 304

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 21/54 (38%), Positives = 36/54 (66%)
 Frame = +3

Query: 21  ILTLQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLRFTDQWMISEIINPYLVN 182
           +L+ Q++ +YT+D +GLK +D   K+ F+S PG+HLR     ++  ++ PYL N
Sbjct: 238 LLSPQQTKLYTEDWIGLKTLDAARKVKFVSVPGEHLRIAQDDVVKHVV-PYLKN 290


>At4g17483.1 68417.m02615 palmitoyl protein thioesterase family
           protein
          Length = 300

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 21/53 (39%), Positives = 36/53 (67%)
 Frame = +3

Query: 21  ILTLQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLRFTDQWMISEIINPYLV 179
           +L+ Q++ +Y +D +GLK +D  GK+ F S  GDHL  +D+ ++ E + PYL+
Sbjct: 245 LLSAQQTKLYREDWIGLKALDAAGKVKFESVLGDHLSISDEEVV-EFVVPYLM 296


>At3g60340.2 68416.m06746 palmitoyl protein thioesterase family
           protein palmitoyl-protein thioesterase precursor, Mus
           musculus, EMBL:AF071025
          Length = 338

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 21/54 (38%), Positives = 36/54 (66%)
 Frame = +3

Query: 15  RRILTLQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLRFTDQWMISEIINPYL 176
           + IL  QE+ +YT+D +GL+ +D+ GK+ F++  G+HL+ +   M   I+ PYL
Sbjct: 237 KTILPPQETKLYTEDWIGLRTLDEAGKVKFVNVSGNHLQISHTDMKKHIV-PYL 289


>At3g60340.1 68416.m06745 palmitoyl protein thioesterase family
           protein palmitoyl-protein thioesterase precursor, Mus
           musculus, EMBL:AF071025
          Length = 338

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 21/54 (38%), Positives = 36/54 (66%)
 Frame = +3

Query: 15  RRILTLQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLRFTDQWMISEIINPYL 176
           + IL  QE+ +YT+D +GL+ +D+ GK+ F++  G+HL+ +   M   I+ PYL
Sbjct: 237 KTILPPQETKLYTEDWIGLRTLDEAGKVKFVNVSGNHLQISHTDMKKHIV-PYL 289


>At5g47350.1 68418.m05836 palmitoyl protein thioesterase family
           protein
          Length = 316

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 16/48 (33%), Positives = 31/48 (64%)
 Frame = +3

Query: 21  ILTLQESAIYTQDRLGLKRMDKEGKLVFLSTPGDHLRFTDQWMISEII 164
           +L +QE+ +Y +D +GLK +   GK+ F++  GDHL   D+ ++  ++
Sbjct: 246 VLPVQETKLYIEDWIGLKALVVAGKVQFVNVTGDHLIMADEDLVKYVV 293


>At5g44930.2 68418.m05510 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 443

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 33  QESAIYTQDRLGLKR-MDKEGKLVFLSTPGDHLRFTDQWMISEIINPY 173
           ++  I   D   LKR MD+    V L T  D LR     ++ ++I PY
Sbjct: 182 RDHVIVAGDPNALKRVMDRVKNAVLLVTDFDRLRADQGSLVKDVIIPY 229


>At5g44930.1 68418.m05509 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 443

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 33  QESAIYTQDRLGLKR-MDKEGKLVFLSTPGDHLRFTDQWMISEIINPY 173
           ++  I   D   LKR MD+    V L T  D LR     ++ ++I PY
Sbjct: 182 RDHVIVAGDPNALKRVMDRVKNAVLLVTDFDRLRADQGSLVKDVIIPY 229


>At5g09930.1 68418.m01148 ABC transporter family protein 
          Length = 678

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 72  KRMDKEGKLVFLSTPGDHLRFTDQWMISEIINPY 173
           K M K   L+ L  P +HL    + M+ E IN Y
Sbjct: 542 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEY 575


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,294,325
Number of Sequences: 28952
Number of extensions: 111394
Number of successful extensions: 239
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)