Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A02
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40780.2 68418.m04951 lysine and histidine specific transport... 28 3.1
At5g40780.1 68418.m04950 lysine and histidine specific transport... 28 3.1
At5g65280.1 68418.m08211 lanthionine synthetase C-like family pr... 28 4.1
At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar... 27 5.4
At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar... 27 5.4
At3g56830.1 68416.m06320 expressed protein contains Pfam profile... 27 5.4
At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof... 27 5.4
At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR... 27 7.1
>At5g40780.2 68418.m04951 lysine and histidine specific transporter,
putative strong similarity to lysine and histidine
specific transporter GI:2576361 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 445
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 257 VQFAISPLPNPSAITGVSL-CYVMTLLKSYRQFE*HASTLVKEEI 388
V F +S LPN ++I+GVSL VM+L S + AS V+E++
Sbjct: 167 VHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSASKGVQEDV 211
>At5g40780.1 68418.m04950 lysine and histidine specific transporter,
putative strong similarity to lysine and histidine
specific transporter GI:2576361 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 446
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 257 VQFAISPLPNPSAITGVSL-CYVMTLLKSYRQFE*HASTLVKEEI 388
V F +S LPN ++I+GVSL VM+L S + AS V+E++
Sbjct: 168 VHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSASKGVQEDV 212
>At5g65280.1 68418.m08211 lanthionine synthetase C-like family
protein contains Pfam domain, PF05147: Lanthionine
synthetase C-like protein
Length = 433
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +2
Query: 227 DGTKLGEMRVVQFAISPLPNPSAITGVSLCYVMTLLKSYRQFE*HASTLVKEEIVSKCVL 406
+ T G + + P+ +P+ TG+ L T LKSY H L EI+ C
Sbjct: 62 EATWKGGVEALASGSGPVLDPTVYTGL-LGTAFTCLKSYEVTRNHQDLLTCAEIIDTCAN 120
Query: 407 V 409
V
Sbjct: 121 V 121
>At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase from Solanum tuberosum
[SP|p14673]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 352
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -2
Query: 441 NQSVNFLFSNKTKTHLLTISSFTKVLACHSNCL*LFNRVIT*HK---LTPVIAEGLG 280
+Q F K H +SSF++ HS C + + HK L+ +A GLG
Sbjct: 101 DQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLG 157
>At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase from Solanum tuberosum
[SP|p14673]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 381
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -2
Query: 441 NQSVNFLFSNKTKTHLLTISSFTKVLACHSNCL*LFNRVIT*HK---LTPVIAEGLG 280
+Q F K H +SSF++ HS C + + HK L+ +A GLG
Sbjct: 130 DQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLG 186
>At3g56830.1 68416.m06320 expressed protein contains Pfam profile
PF04483: Protein of unknown function (DUF565)
Length = 230
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 27 FLH*NQTTLLKLPRWRSCITVRLSF*GLGFDPRVGSSA 140
FLH Q L++ R S T++ S G FDP GSS+
Sbjct: 38 FLHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGSSS 75
>At2g34230.1 68415.m04188 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 716
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 284 NPSAITGVSLCYVMTLLKSYRQFE*HASTLVKEEIVSKCVLVLFEN 421
NP I + L ++ +LK + Q +T V+E +VSK V L+EN
Sbjct: 395 NPQCICFLDLKHLKHILKKFSQL----TTDVRESLVSKVVNQLWEN 436
>At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1197
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2
Query: 254 VVQFAISPLPNPSAITGVSLCYVMTLLKSYRQFE*HASTLVK 379
+V+F + P N + ++G++LC V+ S++ + HA+ +VK
Sbjct: 983 MVEFELPPHWNHNRLSGIALCVVV----SFKNCKSHANLIVK 1020
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,717,205
Number of Sequences: 28952
Number of extensions: 192970
Number of successful extensions: 470
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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