Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D09
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04980.1 68414.m00497 thioredoxin family protein similar to S...    93   1e-19
At2g32920.1 68415.m04036 thioredoxin family protein similar to S...    87   5e-18
At3g49040.1 68416.m05357 F-box family protein contains F-box dom...    30   1.0  
At4g28840.1 68417.m04122 expressed protein                             29   1.3  
At4g25020.1 68417.m03589 KOW domain-containing protein / D111/G-...    29   1.3  
At3g02180.2 68416.m00193 expressed protein                             29   2.3  
At3g02180.1 68416.m00192 expressed protein                             29   2.3  
At2g23230.1 68415.m02774 terpene synthase/cyclase family protein       28   4.1  

>At1g04980.1 68414.m00497 thioredoxin family protein similar to
           SP|Q63081 Protein disulfide isomerase A6 precursor (EC
           5.3.4.1) {Rattus norvegicus}; contains Pfam profile
           PF00085: Thioredoxin
          Length = 443

 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 43/123 (34%), Positives = 69/123 (56%)
 Frame = +3

Query: 3   NDYISILKRLGDKYKSKMWGWIWAEAAAQPTLEEALELGGFGYPAMAVVNAKKLKFSTLR 182
           N Y+ +L  + DK+K   +G++W  A  QP LE+ + +GG+GYPAM  +NAKK  ++ L+
Sbjct: 314 NKYLEMLLSVADKFKKDPYGFVWVAAGKQPDLEKRVGVGGYGYPAMVALNAKKGAYAPLK 373

Query: 183 GSFSETGINEFLRGLSFGRGQTAPVKGAEMPKITTTEPWDGNDGELPLEEDIDLSDVDLE 362
             F    + +F++  + G     P+ G    +I  TE WDG DGE+   ++  L D+   
Sbjct: 374 SGFEVKHLKDFVKEAAKGGKGNLPIDGT--MEIVKTEAWDGKDGEVVDADEFSLEDLMGN 431

Query: 363 KDE 371
            DE
Sbjct: 432 DDE 434


>At2g32920.1 68415.m04036 thioredoxin family protein similar to
           SP|Q15084 Protein disulfide isomerase A6 precursor (EC
           5.3.4.1) {Homo sapiens}; contains Pfam profile PF00085:
           Thioredoxin
          Length = 440

 Score = 87.4 bits (207), Expect = 5e-18
 Identities = 39/117 (33%), Positives = 67/117 (57%)
 Frame = +3

Query: 3   NDYISILKRLGDKYKSKMWGWIWAEAAAQPTLEEALELGGFGYPAMAVVNAKKLKFSTLR 182
           N Y+ +L  + +K+K + + ++W  A  Q  LE+ + +GG+GYPAM  +N KK  ++ L+
Sbjct: 313 NKYLEMLLSVAEKFKKQPYSFMWVAAVTQMDLEKRVNVGGYGYPAMVAMNVKKGVYAPLK 372

Query: 183 GSFSETGINEFLRGLSFGRGQTAPVKGAEMPKITTTEPWDGNDGELPLEEDIDLSDV 353
            +F    + EF++    G     P+ G   P+I  T+ WDG DGEL  E++  L ++
Sbjct: 373 SAFELQHLLEFVKDAGTGGKGNVPMNGT--PEIVKTKEWDGKDGELIEEDEFSLDEL 427


>At3g49040.1 68416.m05357 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 415

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 84  AQPTLEE-ALELGGFGYPAMAVVNAKKLKFSTLR 182
           A P+LE   +E  GFGY    V+NA  LK+  +R
Sbjct: 207 AVPSLERLTIEDSGFGYGCCYVINAPSLKYLNIR 240


>At4g28840.1 68417.m04122 expressed protein
          Length = 146

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 386 NSELCI-VLHSVLCYVLCACVLTCRINKLLVAVS 484
           N  +CI +LHS LC  +C C+ T  ++  +++ +
Sbjct: 113 NMMVCINMLHSKLCTYICMCIFTYTVSSTMLSTN 146


>At4g25020.1 68417.m03589 KOW domain-containing protein /
           D111/G-patch domain-containing protein contains Pfam
           profiles PF01585: G-patch domain, PF00467: KOW motif
          Length = 375

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 186 SFSETGINE-FLRGLSFGRGQTAPVKGAEMPKITTTEPWDGNDG 314
           SF   G  E  L G  +  GQ   +K  E  KI   E W GN+G
Sbjct: 136 SFPVDGFGEALLAGYGWKPGQGIGLKAKEDVKIVEYEKWSGNEG 179


>At3g02180.2 68416.m00193 expressed protein
          Length = 122

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 201 GINEFLRGLSFGRGQTAPVKGAEMPKITTTEPWDGNDG 314
           G+NE   G  FG GQ +    A M   TTT      DG
Sbjct: 10  GVNESSLGYLFGSGQPSSAAAATMGTTTTTTTTTTTDG 47


>At3g02180.1 68416.m00192 expressed protein
          Length = 122

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 201 GINEFLRGLSFGRGQTAPVKGAEMPKITTTEPWDGNDG 314
           G+NE   G  FG GQ +    A M   TTT      DG
Sbjct: 10  GVNESSLGYLFGSGQPSSAAAATMGTTTTTTTTTTTDG 47


>At2g23230.1 68415.m02774 terpene synthase/cyclase family protein 
          Length = 611

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 69  WAEAAAQPTLEEALELGGFGYPAMAVV 149
           WA A   PT+EE LE+GG      A +
Sbjct: 433 WAAAEKVPTVEEYLEVGGVAVTMYATI 459


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,288,808
Number of Sequences: 28952
Number of extensions: 141271
Number of successful extensions: 514
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)