Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D05
         (285 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25690.1 68415.m03079 senescence-associated protein-related s...    29   0.66 
At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase fa...    27   2.0  
At2g43250.1 68415.m05375 expressed protein  and genefinder             27   2.7  
At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylas...    27   2.7  
At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative ...    26   4.6  
At1g22420.1 68414.m02803 hydroxyproline-rich glycoprotein family...    25   6.1  
At5g08290.1 68418.m00976 yellow-leaf-specific protein 8 (YLS8) /...    25   8.1  
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...    25   8.1  
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein...    25   8.1  

>At2g25690.1 68415.m03079 senescence-associated protein-related
           similar to senescence-associated protein SAG102
           (GI:22331931) [Arabidopsis thaliana]
          Length = 324

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 10  THIPGFGDKVTAAGKVNLFHN-DNHDITAKAFATRNMPDIANVPNFNTVGGGID-YMFKD 183
           THI  +GD+V    K  L  + DN +     F + N   I N  N   +GGG D YM+++
Sbjct: 233 THI--YGDRVLECHKNELKGDEDNKEKFGSVFPSDNFLGICNFCN-KKLGGGDDIYMYRE 289

Query: 184 K 186
           K
Sbjct: 290 K 290


>At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
           musculus [SP|P70704], {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1213

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 103 ATRNMPDIANVPNFNTVGGGIDYMFKDKIG 192
           A  N P  A   N N   G ++Y+F DK G
Sbjct: 387 AETNTPASARTSNLNEELGQVEYIFSDKTG 416


>At2g43250.1 68415.m05375 expressed protein  and genefinder
          Length = 625

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = +1

Query: 49  GKVNLFHNDNHDITAKAFATRNMPDIANVPNFNTVGGGIDYMFKDKIGASATAAHTDFI 225
           G +NLF    H     AF    +P  A  P F + G     + K  + A    A T  I
Sbjct: 460 GSLNLFLTHTHKAVTFAFTKVAVPSKAMAPGFASSGAKSTSLVKASLSAEKIRAVTHSI 518


>At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylase,
           putative / AIR carboxylase, putative similar to
           SP|P55195 Phosphoribosylaminoimidazole carboxylase,
           chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
           (AIRC) {Vigna aconitifolia}; contains Pfam profiles
           PF02222: ATP-grasp domain, PF00731: AIR carboxylase
          Length = 642

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 72  VVEEIHFAGSCHLVSEPGDV 13
           VVE IH    CH+V  P DV
Sbjct: 293 VVETIHRDNICHIVKAPADV 312


>At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative
           similar to RNA-directed RNA polymerase [Lycopersicon
           esculentum] gi|4038592|emb|CAA71421
          Length = 1133

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 121 DIANVPNFNTVGGGIDYMFKDKIGASATA 207
           D+  +P+      G DY F D IG  + A
Sbjct: 535 DVEQIPDIEVTTDGADYCFSDGIGKISLA 563


>At1g22420.1 68414.m02803 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 480

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 3   HGYTHPRVRRQGDSCRQSESLP 68
           HG   P +   GD C+Q ES+P
Sbjct: 143 HGSMLPPLFVNGDECQQQESIP 164


>At5g08290.1 68418.m00976 yellow-leaf-specific protein 8 (YLS8) /
           mitosis protein DIM1, putative contains Pfam domain
           PF02966: Mitosis protein DIM1; identical to cDNA YLS8
           mRNA for Dim1 homolog GI:13122293
          Length = 142

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 88  TAKAFATRNMPDIANVPNFNTV 153
           T K FA   + DI  VP+FNT+
Sbjct: 51  TIKNFAVIYLVDITEVPDFNTM 72


>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
           PROSITE domains, PS00674: AAA-protein family signature
           and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 106 WRKPSL*CRGYRCGRDSLCRQLSPCLRTRGCVY 8
           +R  SL C   RC R        PC R  GC++
Sbjct: 587 FRGRSLKCT--RCDRPGATTGCRPCARANGCIF 617


>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
          contains Pfam domain, PF00098: Zinc knuckle
          Length = 119

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 57 HFAGSCHLVSEP 22
          HFA SCH+V++P
Sbjct: 44 HFARSCHVVTQP 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,884,947
Number of Sequences: 28952
Number of extensions: 136039
Number of successful extensions: 365
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 251821800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)