Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D02
(426 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 77 7e-15
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 77 7e-15
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 77 7e-15
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 77 7e-15
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 71 2e-13
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 42 2e-04
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 34 0.046
At4g25750.1 68417.m03707 ABC transporter family protein Bactroce... 29 1.7
At5g63950.1 68418.m08030 SNF2 domain-containing protein / helica... 28 2.3
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ... 28 3.0
At5g11940.1 68418.m01396 subtilase family protein contains simil... 28 3.0
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 27 4.0
At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 7.0
At4g15130.1 68417.m02324 cholinephosphate cytidylyltransferase, ... 27 7.0
At4g14070.1 68417.m02172 AMP-binding protein, putative similar t... 27 7.0
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 27 7.0
At2g36400.1 68415.m04467 expressed protein nearly identical to t... 27 7.0
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ... 26 9.3
At2g02550.1 68415.m00194 exonuclease family protein contains sim... 26 9.3
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 26 9.3
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 76.6 bits (180), Expect = 7e-15
Identities = 33/47 (70%), Positives = 42/47 (89%)
Frame = -1
Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 286
+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 384 NGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 76.6 bits (180), Expect = 7e-15
Identities = 33/47 (70%), Positives = 42/47 (89%)
Frame = -1
Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 286
+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 384 NGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 76.6 bits (180), Expect = 7e-15
Identities = 33/47 (70%), Positives = 42/47 (89%)
Frame = -1
Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 286
+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 384 NGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 76.6 bits (180), Expect = 7e-15
Identities = 33/47 (70%), Positives = 42/47 (89%)
Frame = -1
Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 286
+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 384 NGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 71.3 bits (167), Expect = 2e-13
Identities = 29/46 (63%), Positives = 40/46 (86%)
Frame = -1
Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 289
+ +AAI+N+ P+KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V
Sbjct: 50 NSEAAIINMTPTKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 41.9 bits (94), Expect = 2e-04
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -1
Query: 426 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 298
+G A + + + +C+E F +FP LGRF +R +T+AVG +
Sbjct: 480 NGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 33.9 bits (74), Expect = 0.046
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -1
Query: 417 AAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 289
+A++ + P+CVE+F E LGR +R +TVA+G + +
Sbjct: 621 SAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663
>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
tryoni membrane transporter (white) gene, PID:g3676298
Length = 577
Score = 28.7 bits (61), Expect = 1.7
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -3
Query: 223 VASTVNSSVLYTTAILHSPKGVQKERRATNSFLFYIFYMAYTVTLFLIYIRLY--IHLKC 50
+A T + ++L L S + KE +LF F+ Y L + I Y +H KC
Sbjct: 458 IAGTSSVTILLAAFFLFSGYFISKES-LPKYWLFMYFFSMYKYALDALLINEYSCLHNKC 516
Query: 49 FVITAN*SVNS 17
V SVNS
Sbjct: 517 LVWFEEASVNS 527
>At5g63950.1 68418.m08030 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1090
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 292 SLYYTDGDRLPHVTHGETTEGWEFLEGLHTQGLGGNQVDNGGI 420
+L YT ++ + + EG +L LHTQG GG D+ G+
Sbjct: 364 NLSYTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGL 406
>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 556
Score = 27.9 bits (59), Expect = 3.0
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = -2
Query: 197 FIYNCD---TSFTERCSEGKKGYKLIPFLYFLHGLYCNIIFNLYKVIHTPQMFCYNCKLK 27
+ Y+CD ++ C GK Y + P FL C+ F + HT + FC C L+
Sbjct: 465 WFYSCDKCCSTLHIDCVLGKSPY-MRPGHSFL---LCSREFQVVSNNHTSRPFCTICSLR 520
Query: 26 CK 21
CK
Sbjct: 521 CK 522
>At5g11940.1 68418.m01396 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 762
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 298 YYTDGDRLPHVTHGETTEGWEFLEGLHTQGLGGNQVDNG 414
Y + + LPH TH +T G F+ + G G + G
Sbjct: 217 YMSARESLPHGTHVASTAGGSFVSNVSDNGFGVGTIRGG 255
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -2
Query: 200 SFIYNCD---TSFTERCSEGKKGYKLIPFLYFLHGLYCNIIFNLYKVIHTPQMFCYNCKL 30
++ Y+CD + C G+ Y L P F GLY + + + ++FCY C+L
Sbjct: 557 TWFYSCDFCKITLHVNCLLGEDIY-LKPCHIFKVGLYYKEV-EIARNDGNSRLFCYTCEL 614
Query: 29 KC 24
+C
Sbjct: 615 RC 616
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 416 PPLSTWFPPSPCVWSPSRNSHPSVVSPCVT 327
PP+ + PP P V SP +S P P +T
Sbjct: 49 PPVVSSSPPPPVVSSPPPSSSPPPSPPVIT 78
>At4g15130.1 68417.m02324 cholinephosphate cytidylyltransferase,
putative / phosphorylcholine transferase, putative /
CTP:phosphocholine cytidylyltransferase, putative strong
similarity to CTP:phosphorylcholine cytidylyltransferase
[Arabidopsis thaliana] GI:21668498; contains Pfam
profile PF01467: Cytidylyltransferase; identical to cDNA
AtCCT2 for CTP:phosphorylcholine cytidylyltransferase
GI:21668499
Length = 299
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 268 TTCFLEVHSLYYTDGDRLPHV-THGETTEGWEFLEGL 375
TT FL+ H + Y D LP+ T G + +EF++ +
Sbjct: 98 TTEFLDKHKIDYVAHDALPYADTSGAGNDVYEFVKSI 134
>At4g14070.1 68417.m02172 AMP-binding protein, putative similar to
AMP-binding protein [gi:1617272] from Brassica napus;
contains Pfam AMP-binding enzyme domain PF00501;
identical to cDNA acyl-CoA synthetase-like protein
GI:20799730
Length = 727
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 283 QGSRWWQSHQSCRKSHQGQEVASTVNSSVLYTTAILHSPKGVQKERR 143
Q SR S + +S++ Q + S ++++YT+ +PKGV R
Sbjct: 256 QESRAKLSASNDTRSYRNQFIDSDDTAAIMYTSGTTGNPKGVMLTHR 302
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 119 YFLHGLYCNIIFNLYKVIHTPQMFCYNCK 33
YF H CN ++ V+H PQ N K
Sbjct: 212 YFYHCSSCNFTLDMRCVLHPPQQSLLNLK 240
>At2g36400.1 68415.m04467 expressed protein nearly identical to
transcription activator GRL3 [Arabidopsis thaliana]
GI:21539884 (unpublished); supporting cDNA
gi|21539883|gb|AY102636.1|
Length = 398
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -3
Query: 319 DGRRRCNKGCELQGSRWWQSHQSCRKSH-QGQEVASTVNSSVLYT-TAILH 173
+G R N G + Q WW S H G +A + SS + T++LH
Sbjct: 338 EGARSNNNGRDQQNMSWWSGGGSNHHHHNMGGPLAEALRSSSSSSPTSVLH 388
>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 495
Score = 26.2 bits (55), Expect = 9.3
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = -2
Query: 50 FCYNCKLKCKF 18
FC++C+L+CKF
Sbjct: 450 FCFHCELRCKF 460
>At2g02550.1 68415.m00194 exonuclease family protein contains
similarity to exonuclease I [Homo sapiens]
gi|4249655|gb|AAD13754
Length = 200
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 169 PKGVQKERRATNSFLFYIFYMAYTVTLFLIYI 74
PK KE+ AT F +I Y + +F+ Y+
Sbjct: 116 PKRKDKEKNATKIFQSHIHITPYVIHVFIEYV 147
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 26.2 bits (55), Expect = 9.3
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = -2
Query: 200 SFIYNCD---TSFTERCSEGKKGYKLIPFLYFLHGLYCNIIFNLYKVIHTPQMFCYNCKL 30
++ Y CD + C GK Y L P F GL+ + + + ++FCY C+L
Sbjct: 597 TWFYTCDYCMITLHVNCLLGKDIY-LKPCHIFKVGLFYKEV-EIARNDGNSRLFCYICRL 654
Query: 29 KC 24
+C
Sbjct: 655 RC 656
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,637,971
Number of Sequences: 28952
Number of extensions: 194672
Number of successful extensions: 625
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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