Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C13
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49350.1 68416.m05395 RabGAP/TBC domain-containing protein si...    28   4.0  
At1g43950.1 68414.m05070 auxin-responsive factor, putative simil...    28   5.3  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    27   9.3  
At3g54390.1 68416.m06013 expressed protein similar to 6b-interac...    27   9.3  

>At3g49350.1 68416.m05395 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 554

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 121 TTSRSNLVTELRSPPGTGQDASWL-CRQRLPLVVTETSGSRR*RP 252
           T+S SN  + L SPP +   +SW+  R  L +V + +  S   RP
Sbjct: 10  TSSSSNPSSPLSSPPSSSSSSSWIQIRSALFVVASSSPASCSDRP 54


>At1g43950.1 68414.m05070 auxin-responsive factor, putative similar
           to auxin response factor 9 [Arabidopsis thaliana]
           GI:4580575; contains Pfam profile PF02362: B3 DNA
           binding domain; non-consensus TT donor splice site at
           exon 5
          Length = 222

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 230 LVSVTTRGNRWRHNHEASWPVPGGDRSSVTRF 135
           L+++   GN+WR  H  S+ VP GD +    F
Sbjct: 166 LIAIDLHGNQWRFKH--SYRVPRGDTTGWNAF 195


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = +2

Query: 116 PGQLRVRISSPSSDHRQGPAKMLRGCVASGCPSS--SRRRVGPGDDGPLIIYYLSTTTA- 286
           PG +  + SSP S+       +  G   S  PS   S   +GP  DGP     +ST    
Sbjct: 260 PGSMAPKSSSPVSNSPTVSPSLAPGGSTSSSPSDSPSGSAMGPSGDGPSAAGDISTPAGA 319

Query: 287 ---RRSTAQGV 310
              ++S+A G+
Sbjct: 320 PGQKKSSANGM 330


>At3g54390.1 68416.m06013 expressed protein similar to
           6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
           GI:18149189
          Length = 296

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
 Frame = -2

Query: 463 LRRTCPAPLESGALPIRC-----LLSPTLPPVLH 377
           LR T P P     LP+ C     LL P LP V H
Sbjct: 123 LRGTQPQPQPQAVLPLNCSVPLLLLEPPLPAVAH 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,686,078
Number of Sequences: 28952
Number of extensions: 213265
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)