Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C09
         (416 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04550.3 68415.m00462 dual specificity protein phosphatase fa...    29   1.7  
At2g04550.2 68415.m00461 dual specificity protein phosphatase fa...    29   1.7  
At2g04550.1 68415.m00463 dual specificity protein phosphatase fa...    29   1.7  
At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containi...    27   5.1  
At5g63490.1 68418.m07970 CBS domain-containing protein / octicos...    26   8.9  
At2g23150.1 68415.m02765 NRAMP metal ion transporter 3 (NRAMP3) ...    26   8.9  

>At2g04550.3 68415.m00462 dual specificity protein phosphatase
           family protein contains Pfam profile: PF00782 dual
           specificity phosphatase, catalytic domain
          Length = 188

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -3

Query: 270 MRCEARLNVC-ICGAKTRFDNCDIACICVHC--VFKPVVSRENPRLRRFISQINDSFV 106
           MR   R N C ICG   +++  ++  +C HC  V    V+ +   +  F S+I   F+
Sbjct: 1   MRKRERENPCSICGHYHKYEEGEVCGVCGHCMPVSSDTVAPQQVHVSAFPSEILPEFL 58


>At2g04550.2 68415.m00461 dual specificity protein phosphatase
           family protein contains Pfam profile: PF00782 dual
           specificity phosphatase, catalytic domain
          Length = 180

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -3

Query: 270 MRCEARLNVC-ICGAKTRFDNCDIACICVHC--VFKPVVSRENPRLRRFISQINDSFV 106
           MR   R N C ICG   +++  ++  +C HC  V    V+ +   +  F S+I   F+
Sbjct: 1   MRKRERENPCSICGHYHKYEEGEVCGVCGHCMPVSSDTVAPQQVHVSAFPSEILPEFL 58


>At2g04550.1 68415.m00463 dual specificity protein phosphatase
           family protein contains Pfam profile: PF00782 dual
           specificity phosphatase, catalytic domain
          Length = 257

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -3

Query: 270 MRCEARLNVC-ICGAKTRFDNCDIACICVHC--VFKPVVSRENPRLRRFISQINDSFV 106
           MR   R N C ICG   +++  ++  +C HC  V    V+ +   +  F S+I   F+
Sbjct: 1   MRKRERENPCSICGHYHKYEEGEVCGVCGHCMPVSSDTVAPQQVHVSAFPSEILPEFL 58


>At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containing
           protein
          Length = 528

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 260 SHLISRTMASLTQMHKTGPHIKKRKSRNPLNGNPFAKGVVLKTLIKK 400
           ++ + +T  S+T+       ++K K    L  NP+ K +  KT++KK
Sbjct: 482 ANYVIQTALSVTKGAVRARLVEKVKRFGKLQSNPYCKKIFSKTILKK 528


>At5g63490.1 68418.m07970 CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein contains Pfam profiles: PF00571 CBS domain,
           PF00564: PB1 domain
          Length = 543

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 30  EAKVGYSYPFVNSCSIKFEIK 92
           EA+ G S+PF N+ S K E K
Sbjct: 392 EAETGKSFPFANTFSFKIEDK 412


>At2g23150.1 68415.m02765 NRAMP metal ion transporter 3 (NRAMP3)
           identical to metal transporter Nramp3 [Arabidopsis
           thaliana] gi|6468012|gb|AAF13278; member of the natural
           resistance-associated macrophage protein (NRAMP) metal
           transporter family, PMID:11500563
          Length = 509

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 408 FFGFLISVFKTTPLAKGF 355
           F  FLI++F TT  AKGF
Sbjct: 288 FISFLINLFVTTVFAKGF 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,972,218
Number of Sequences: 28952
Number of extensions: 139835
Number of successful extensions: 317
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)