Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C03
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02120.1 68415.m00148 plant defensin-fusion protein, putative...    29   1.4  
At5g01130.1 68418.m00017 hypothetical protein contains Pfam prof...    29   2.5  
At5g50200.3 68418.m06216 expressed protein similar to unknown pr...    27   5.7  
At5g50200.2 68418.m06218 expressed protein similar to unknown pr...    27   5.7  
At5g50200.1 68418.m06217 expressed protein similar to unknown pr...    27   5.7  
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    27   5.7  
At4g04920.1 68417.m00715 expressed protein                             27   5.7  
At5g52550.1 68418.m06525 expressed protein                             27   7.5  

>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
           (PDF2.1) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); contains a
           gamma-thionin family signature (PDOC00725)
          Length = 77

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -1

Query: 314 SKCRRSCHPDELPGG-CRPFCLRVFC 240
           + C   CH +  PGG CR F  R FC
Sbjct: 48  TNCENVCHNEGFPGGDCRGFRRRCFC 73


>At5g01130.1 68418.m00017 hypothetical protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674)
          Length = 484

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 142 HAADVQTVPAALHHHYSCQ 198
           +AA+V T  +A+HH Y+CQ
Sbjct: 314 NAAEVSTSKSAIHHFYTCQ 332


>At5g50200.3 68418.m06216 expressed protein similar to unknown
           protein (pir||T05562) isoform contains a non-consensus
           AT acceptor splice site at intron 1
          Length = 210

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 380 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIE 514
           HK+ AK  D+   S  WT  +D+     F    V++YAV  +G E
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHE 150


>At5g50200.2 68418.m06218 expressed protein similar to unknown
           protein (pir||T05562) isoform contains a non-consensus
           AT acceptor splice site at intron 1
          Length = 210

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 380 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIE 514
           HK+ AK  D+   S  WT  +D+     F    V++YAV  +G E
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHE 150


>At5g50200.1 68418.m06217 expressed protein similar to unknown
           protein (pir||T05562) isoform contains a non-consensus
           AT acceptor splice site at intron 1
          Length = 210

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 380 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIE 514
           HK+ AK  D+   S  WT  +D+     F    V++YAV  +G E
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHE 150


>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 351 LRGCEKV-SSGLTVQVPTILSP*RASRRMPAILSSGVLPL 235
           LR C ++ S+  +    T+LSP +  RR+P   SS + PL
Sbjct: 17  LRPCRQLHSTPKSTGDVTVLSPVKGRRRLPTCWSSSLFPL 56


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
 Frame = +2

Query: 200 SVKAGHSIDVVISGKTPEDKMAGILLEARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAVT 379
           ++++   I VV+  K  E  + G   +       +    VSP   F   L   +PN+ + 
Sbjct: 43  TIESTDPILVVVEEKLLEKSVDGEKEDDNSSSSNMEIDPVSPATVFCVKLK--QPNSNLL 100

Query: 380 HKMHAKELDRQTVSYPWTAPKD---LEGDVVFKVTIVKSYAVFWVGI 511
           HKM   EL R   +  W    +      +   ++   K+   FW+ I
Sbjct: 101 HKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPI 147


>At5g52550.1 68418.m06525 expressed protein
          Length = 360

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 141 PWDHVEARARRCSGGVSAGKRHHRCNCYYVSEHH 40
           PWD+   +    SGG++    H RC+ Y V +++
Sbjct: 268 PWDYT-TKINLFSGGINRFFPHQRCSSYAVHDNN 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,689,639
Number of Sequences: 28952
Number of extensions: 284588
Number of successful extensions: 636
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)