Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C02
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54670.1 68418.m06807 kinesin-like protein C (KATC)                 30   0.83 
At5g28930.1 68418.m03578 hypothetical protein various predicted ...    29   1.4  
At4g04700.1 68417.m00690 calcium-dependent protein kinase, putat...    29   2.5  
At3g26230.1 68416.m03272 cytochrome P450 family protein contains...    29   2.5  
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a...    28   3.3  
At4g33230.1 68417.m04730 pectinesterase family protein contains ...    27   7.7  
At4g05470.1 68417.m00829 F-box family protein (FBL21) contains s...    27   7.7  
At4g04770.1 68417.m00699 ATP-binding-cassette transporter (ABC1)...    27   7.7  
At2g40910.2 68415.m05048 F-box protein-related similar to  F-box...    27   7.7  
At2g40910.1 68415.m05049 F-box protein-related similar to  F-box...    27   7.7  
At1g15520.1 68414.m01867 ABC transporter family protein similar ...    27   7.7  

>At5g54670.1 68418.m06807 kinesin-like protein C (KATC)
          Length = 754

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 22/63 (34%), Positives = 36/63 (57%)
 Frame = +1

Query: 157 MQLYNSVIVSDYKAAVKTTFQLEKECRSDVISSVVNKLLLEGQPNVVEYAYSLWYRSGED 336
           +QLYNS +  D   A +T  + EKE R+ +I ++ N   L+GQ + ++   +    S ED
Sbjct: 208 LQLYNSKLQGDLDEAHETIKRGEKE-RTAIIENIGN---LKGQFSALQEQLAASKASQED 263

Query: 337 IVK 345
           I+K
Sbjct: 264 IMK 266


>At5g28930.1 68418.m03578 hypothetical protein various predicted
           proteins, Arabidopsis thaliana
          Length = 509

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 148 DPVMQLYNSVIVSDYKAAVKTTFQLEKECRSDV 246
           D V+  YNSV V D ++   T F  EKE + DV
Sbjct: 286 DDVVSFYNSVDVPDGQSCGGTNFNNEKEFQGDV 318


>At4g04700.1 68417.m00690 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Nicotiana tabacum] gi|3283996|gb|AAC25423;
           contains protein kinase domain, Pfam:PF00069
          Length = 485

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 193 KAAVKTTFQLEKECRSDVISSVVNKLLLEGQPNVVEYAYSLWYRSGEDIVKVY 351
           K  +KT  + ++EC  DV   +     L G+PN+VE+  +   +    IV  Y
Sbjct: 57  KTILKTKLK-DEECEEDVKREIRIMKQLSGEPNIVEFKNAYEDKDSVHIVMEY 108


>At3g26230.1 68416.m03272 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 498

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
 Frame = +1

Query: 175 VIVSDYKAAVKTTFQLEKECRSDVISSVVNKLLLEGQP-NVVEYAYSLWYRSGEDIVKVY 351
           V++S  +AA +     + EC +  I++V +KL  +GQ   +  Y  SL        +K +
Sbjct: 71  VVISSTEAAEEALKVHDLECCTRPITNVTSKLWRDGQDIGLAPYGESLRELRKLSFLKFF 130

Query: 352 FPIE---FRLLFNEDPVLITNKRDELALK 429
              +   FR +  E+  L+  K  E ALK
Sbjct: 131 STTKVRSFRYIREEENDLMVKKLKEAALK 159


>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
           almost identical to Lon protease homolog 2
           mitochondrial precursor SP:P93655, GI:1848290 from
           [Arabidopsis thaliana]
          Length = 940

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 378 KQQSKLYRKVNFDYVLTGSVPETVSVFDD 292
           KQ  K+YRK+    V  G+VPE  +V  D
Sbjct: 655 KQIEKIYRKIALKLVREGAVPEEPAVASD 683


>At4g33230.1 68417.m04730 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 609

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = +1

Query: 49  VLSALVTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIV--SDYKAAVKTTFQL 222
           ++  L       P C NT  + T  D+P     DP   L ++++    D     K    L
Sbjct: 94  IIQTLCNSTLYKPTCQNTLKNETKKDTP---QTDPRSLLKSAIVAVNDDLDQVFKRVLSL 150

Query: 223 EKECRSDVISSVVNKLLLE 279
           + E + D  +    KLL++
Sbjct: 151 KTENKDDKDAIAQCKLLVD 169


>At4g05470.1 68417.m00829 F-box family protein (FBL21) contains
           similarity to N7 protein GI:3273101 from [Medicago
           truncatula]
          Length = 576

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 167 YNCITGSALLNGGESLEVIETAVLLHRGV 81
           Y  +T   ++NG E L ++ET V+ H  +
Sbjct: 143 YEPMTNKGVMNGIEKLPLLETLVIFHSSI 171


>At4g04770.1 68417.m00699 ATP-binding-cassette transporter (ABC1)
           Identical to the protein described in PMID:11156608 and
           note that sequence was not deposited into GenBank by the
           authors.
          Length = 557

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 451 AGDRASFGAGQTKTGARVSWKLYP 522
           AGDR+     Q +TG+ ++WK YP
Sbjct: 370 AGDRSKISWTQVETGSAITWK-YP 392


>At2g40910.2 68415.m05048 F-box protein-related similar to  F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; similar to F-box protein family, AtFBX8
           (GI:20197464) [Arabidopsis thaliana]
          Length = 442

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 429 LESKFITFIGN*HWIFVKQQSKLYRKVNFDYVLTGSVPETVSVF 298
           + S F T + + HW+FV +    +RKV          P TV  F
Sbjct: 222 ISSAFFTNLKSEHWVFVLEAGGSWRKVRTLESYHPHAPSTVGQF 265


>At2g40910.1 68415.m05049 F-box protein-related similar to  F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; similar to F-box protein family, AtFBX8
           (GI:20197464) [Arabidopsis thaliana]
          Length = 449

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 429 LESKFITFIGN*HWIFVKQQSKLYRKVNFDYVLTGSVPETVSVF 298
           + S F T + + HW+FV +    +RKV          P TV  F
Sbjct: 229 ISSAFFTNLKSEHWVFVLEAGGSWRKVRTLESYHPHAPSTVGQF 272


>At1g15520.1 68414.m01867 ABC transporter family protein similar to
           ABC1 protein GI:14331118 from [Nicotiana
           plumbaginifolia]
          Length = 1423

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 318 PETVSVFDDVWLSFEE*FIYDGADD 244
           PET ++FDD+ L  E   IY+G  D
Sbjct: 388 PETFNLFDDIILIAEGEIIYEGPRD 412


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,396,959
Number of Sequences: 28952
Number of extensions: 167379
Number of successful extensions: 421
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)