Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B19
         (319 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46840.1 68416.m05084 subtilase family protein contains simil...    27   2.7  
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi...    26   4.8  
At5g38790.1 68418.m04690 expressed protein predicted protein, Ar...    26   6.3  
At5g38590.2 68418.m04666 F-box family protein contains F-box dom...    25   8.3  
At3g01140.1 68416.m00018 myb family transcription factor (MYB106...    25   8.3  
At2g39670.2 68415.m04867 radical SAM domain-containing protein s...    25   8.3  
At2g39670.1 68415.m04866 radical SAM domain-containing protein s...    25   8.3  
At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR...    25   8.3  

>At3g46840.1 68416.m05084 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo];
          Length = 738

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 33  SQLDNRVIQGIQALDNLHSKATINITAGGVGHTFVNL 143
           S+L  +V+  + +L +L+ K +  +TA G G    NL
Sbjct: 678 SKLKVKVVPAVLSLKSLYEKKSFTVTASGAGPKAENL 714


>At1g01440.1 68414.m00059 extra-large G-protein-related weak
           similarity to extra-large G-protein  (AtXLG1)
           (GI:3201682) [Arabidopsis thaliana]
          Length = 664

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 92  SHNQYHSGRRRSHIRQSSNEKREGERPR 175
           S+N+Y++    S   + S   +EG RPR
Sbjct: 467 SYNEYYTNTEESEDSRISKASKEGRRPR 494


>At5g38790.1 68418.m04690 expressed protein predicted protein,
           Arabidopsis thaliana; expression supported by MPSS
          Length = 131

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 95  HNQYHSGRRRSH-IRQSSNEKREGE 166
           HN YH G++ S+  R+   +KRE +
Sbjct: 101 HNHYHDGKKTSNSYRKKDKKKRENK 125


>At5g38590.2 68418.m04666 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 410

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 216 FIYNRPLHICLCHSRGLSPS 157
           F++N+  H+ LC  RG SPS
Sbjct: 283 FVFNQLEHLTLCVCRGDSPS 302


>At3g01140.1 68416.m00018 myb family transcription factor (MYB106)
           similar to transforming protein (myb) homolog GB:S26605
           from [Petunia x hybrida]
          Length = 345

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 99  INITAGGVGHTFVNLRMKSERGRGL 173
           IN  +GG+G  F +L +    GRGL
Sbjct: 276 INCGSGGIGEGFTSLLIGDSVGRGL 300


>At2g39670.2 68415.m04867 radical SAM domain-containing protein
           similar to hypothetical protein PIR|S76698|S76698
           contains Pfam profile PF04055: radical SAM domain
           protein
          Length = 431

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +3

Query: 45  NRVIQGIQALDNLHSKATINITAGGVGHTFVNLRMKSERGRGLDYDI 185
           + +I+ + A++++      N+   G+G   +NL+   +  R L+ DI
Sbjct: 201 HEIIEQVLAIEDVFKHRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDI 247


>At2g39670.1 68415.m04866 radical SAM domain-containing protein
           similar to hypothetical protein PIR|S76698|S76698
           contains Pfam profile PF04055: radical SAM domain
           protein
          Length = 428

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +3

Query: 45  NRVIQGIQALDNLHSKATINITAGGVGHTFVNLRMKSERGRGLDYDI 185
           + +I+ + A++++      N+   G+G   +NL+   +  R L+ DI
Sbjct: 198 HEIIEQVLAIEDVFKHRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDI 244


>At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1163

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 39  LDNRVIQGIQALDNLHSKATINITAGG 119
           LD+ V+QG   L  L  K+ I ITA G
Sbjct: 456 LDDGVLQGCLGLKILAEKSLIEITASG 482


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,249,101
Number of Sequences: 28952
Number of extensions: 84384
Number of successful extensions: 258
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)