Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B03
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   147   6e-36
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           147   6e-36
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    31   0.76 
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    31   0.76 
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    30   1.0  
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi...    28   4.1  
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi...    28   4.1  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  147 bits (356), Expect = 6e-36
 Identities = 73/139 (52%), Positives = 92/139 (66%)
 Frame = +3

Query: 174 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 353
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 22  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 81

Query: 354 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 533
            A  LFKIL KYRPE                         K+P  ++ G N VT L+E+ 
Sbjct: 82  LATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIEQN 140

Query: 534 KAQLVVIAHDVDPIELVLF 590
           KAQLVVIAHDVDPIELV++
Sbjct: 141 KAQLVVIAHDVDPIELVVW 159


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  147 bits (356), Expect = 6e-36
 Identities = 72/139 (51%), Positives = 92/139 (66%)
 Frame = +3

Query: 174 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 353
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 23  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 82

Query: 354 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 533
            A  LFK+L KYRPE                         K+P  ++ G N VT L+E+ 
Sbjct: 83  LATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPS-ESKKPIVVKYGLNHVTYLIEQN 141

Query: 534 KAQLVVIAHDVDPIELVLF 590
           KAQLVVIAHDVDPIELV++
Sbjct: 142 KAQLVVIAHDVDPIELVVW 160


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 489 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVL 587
           L+ G N  TK + +  ++ VV+A D +P+E++L
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILL 67


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 489 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVL 587
           L+ G N  TK + +  ++ VV+A D +P+E++L
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILL 67


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 489 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVL 587
           L+ G N  TK + +  ++ +V+A D +P+E++L
Sbjct: 35  LKKGANEATKTLNRGISEFIVMAADTEPLEILL 67


>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 498 GTNTVTKLVEKKKAQLVVIAHDVDPIELV 584
           G +   KL+EK+ AQLVV+A D +  + V
Sbjct: 47  GLHECAKLIEKRVAQLVVLAEDCNQPDYV 75


>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 498 GTNTVTKLVEKKKAQLVVIAHDVDPIELV 584
           G +   KL+EK+ AQLVV+A D +  + V
Sbjct: 47  GLHECAKLIEKRVAQLVVLAEDCNQPDYV 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,668,567
Number of Sequences: 28952
Number of extensions: 213292
Number of successful extensions: 540
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)