Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A04
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosoli...    81   3e-16
At4g27010.1 68417.m03885 expressed protein  ; expression support...    32   0.17 
At5g12400.1 68418.m01458 PHD finger transcription factor, putati...    30   0.92 
At5g58890.1 68418.m07378 MADS-box family protein various predict...    28   2.8  
At1g64310.1 68414.m07288 pentatricopeptide (PPR) repeat-containi...    28   2.8  
At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein ...    27   4.9  
At2g39440.1 68415.m04841 expressed protein                             27   4.9  
At4g22050.1 68417.m03189 aspartyl protease family protein contai...    27   6.5  
At3g46370.1 68416.m05022 leucine-rich repeat protein kinase, put...    27   6.5  
At2g28315.1 68415.m03441 transporter-related low similarity to S...    27   8.6  
At1g01400.1 68414.m00055 hypothetical protein                          27   8.6  

>At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosolic
           (PGIC) identical to SP|P34795 Glucose-6-phosphate
           isomerase, cytosolic (EC 5.3.1.9) (GPI) (Phosphoglucose
           isomerase) (PGI) (Phosphohexose isomerase) (PHI)
           {Arabidopsis thaliana}; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 560

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 44/92 (47%), Positives = 62/92 (67%)
 Frame = +2

Query: 197 DGEILLDYSKNRVDNETISLLLNLAKSRNVEQARDAMFSGKKINFTEDRAVLHIALRNRQ 376
           DG +LLDYS+ R   ET+  LLNLAK+  + +    MF+G+ IN TE+R+VLH+ALR  +
Sbjct: 47  DG-LLLDYSRQRATVETMDKLLNLAKASQLTEKISRMFNGEHINSTENRSVLHVALRAPK 105

Query: 377 NKPILVNGTDVTPDVNAVLKHMKEFSHQIISG 472
           +  I  +G +V P+V  VL  +KEFS +I SG
Sbjct: 106 DAVIKADGMNVVPEVWNVLDKIKEFSDKIRSG 137


>At4g27010.1 68417.m03885 expressed protein  ; expression supported by
            MPSS
          Length = 2535

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 146  QEPDRFNKFSLRLPTPNDGEILLDYSKNRVDNETISLLLNLA 271
            +E D F  F+   P  + G+ +LDY    VD +++  +LN+A
Sbjct: 1539 KEDDLFKVFNSMFPLSSTGKEMLDYEIKEVDVQSVDQILNVA 1580


>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
           similarity to predicted proteins, Arabidopsis thaliana
          Length = 1595

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +2

Query: 212 LDYSKNRVDNETISLLLNLAKSRNVEQARDAMFSGKKINFTEDRAVLHIALRNRQNKPIL 391
           +DY +N  D     + LN+  S +++ A    FSG+K     D  V      ++  +   
Sbjct: 172 IDYEENCSDKRKWDIDLNMDASCDLDNAAICDFSGQKREVGFDLNVEVDVENSKDEEYSQ 231

Query: 392 VNGTDVTPDVN 424
           +NG D+  ++N
Sbjct: 232 MNGNDIVQEIN 242


>At5g58890.1 68418.m07378 MADS-box family protein various predicted
           proteins, Oryza sativa and Arabidopsis thaliana
          Length = 294

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 131 PQLFQQEPDRFNKFSLRLPTPNDGEILLD 217
           PQ FQ  P+ FN     L +P+DG+I +D
Sbjct: 184 PQ-FQGFPNNFNNMGFSLISPHDGQIQMD 211


>At1g64310.1 68414.m07288 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 552

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 53  KINLKQDPAFQ-KLQEYYNLNSDKINIPQLFQQEPDR 160
           K  L +DP F  +L  +Y LN D I+  +LF   P+R
Sbjct: 33  KSKLARDPYFATQLARFYALNDDLISARKLFDVFPER 69


>At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 338

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -1

Query: 245 FHYPLCFLNNLV-RFPHHLEWVG 180
           FH  +C  NN V RF HH  WVG
Sbjct: 156 FHCSIC--NNCVQRFDHHCPWVG 176


>At2g39440.1 68415.m04841 expressed protein
          Length = 773

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 14  FTARVFSIIKMEPKINLKQDPAFQKLQEYYNLNSDKINIPQLFQQEPDRFNK 169
           ++ RV    +ME K  ++    F++   +  L  DK+ + +   Q P RFN+
Sbjct: 300 YSRRVEVSKEMESK-EIRSSSVFERSMRFNGLFQDKLRVVEKQNQPPKRFNQ 350


>At4g22050.1 68417.m03189 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 354

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 90  SFWKAGSCFKLIFGSIFIIENTRAVKV 10
           S W  G  F  +F ++F  +NT AVKV
Sbjct: 321 SHWTLGIPFMRVFHTVFDYQNTLAVKV 347


>At3g46370.1 68416.m05022 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thalian] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 793

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 314 GKKINFTEDRAVLHIALRNRQNKPILVNGTDVTPDVNAV-LKHMKEFSHQIISG 472
           GK +N    + ++HI   N  +  ++  GT  TP ++ + L+ + ++S+  ISG
Sbjct: 50  GKHVNGDTWKEIIHIPKSNSLDVCLIKTGT-TTPIISTLELRSLPKYSYNAISG 102


>At2g28315.1 68415.m03441 transporter-related low similarity to
           SP|Q9NTN3 UDP-glucuronic acid/UDP-N-acetylgalactosamine
           transporter (UDP- GlcA/UDP-GalNAc transporter) {Homo
           sapiens}, SP|Q95YI5 UDP-sugar transporter UST74c (Fringe
           connection protein) {Drosophila melanogaster}
          Length = 240

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 155 PVLVG-TTEEC*FYLNLNYSILVVFGKLDPVS 63
           P++VG  T  C   +++N+S  +V GK  PV+
Sbjct: 118 PIVVGFITLSCLIAVSVNFSTFLVIGKTSPVT 149


>At1g01400.1 68414.m00055 hypothetical protein
          Length = 204

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 221 SKNRVDNETISLLLNLAKSRNVEQARDAMFSGKKINFTEDRAVLHI 358
           ++N VD+ET +     A + +  ++ + +    +IN T  R+VLH+
Sbjct: 8   ARNEVDHETPTKPDESASASSPRRSEETLNQSTQINQTGPRSVLHL 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,266,731
Number of Sequences: 28952
Number of extensions: 201672
Number of successful extensions: 545
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)