Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C09
(863 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 122 2e-28
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 120 9e-28
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 29 4.0
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 29 4.0
At4g22120.1 68417.m03198 early-responsive to dehydration protein... 29 5.3
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 7.0
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 28 7.0
At1g21326.1 68414.m02666 VQ motif-containing protein contains PF... 28 7.0
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain... 28 9.2
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 122 bits (295), Expect = 2e-28
Identities = 58/94 (61%), Positives = 72/94 (76%), Gaps = 2/94 (2%)
Frame = +1
Query: 109 MSLSVARPLLSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 282
M+ + ARPL+++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 283 KEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 384
K+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ
Sbjct: 61 KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ 94
Score = 68.5 bits (160), Expect = 5e-12
Identities = 31/62 (50%), Positives = 33/62 (53%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
AFGNMCRGGRMFAPTK WRRWH ARGH IE +PE+
Sbjct: 96 AFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEM 155
Query: 569 PL 574
PL
Sbjct: 156 PL 157
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Frame = +3
Query: 549 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYP 728
++ P P VV+D + + KT A+ L+++ A+ D G
Sbjct: 149 IENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYIS 208
Query: 729 AXGPLIIFXXDQG-LTRAFRNIPGXXXXXXXXXXXXXXAXGGH 854
GPL+++ + + +AFRN+PG A GGH
Sbjct: 209 RKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGH 251
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +1
Query: 685 LRAGKGKMRNRRRIQRXDP 741
+R GKGKMRNRR I R P
Sbjct: 194 IRPGKGKMRNRRYISRKGP 212
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 120 bits (290), Expect = 9e-28
Identities = 58/91 (63%), Positives = 68/91 (74%), Gaps = 2/91 (2%)
Frame = +1
Query: 118 SVARPLLSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 291
+ ARPL++V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 292 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 384
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ
Sbjct: 65 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ 95
Score = 68.5 bits (160), Expect = 5e-12
Identities = 31/62 (50%), Positives = 33/62 (53%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
AFGNMCRGGRMFAPTK WRRWH ARGH IE +PE+
Sbjct: 97 AFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEM 156
Query: 569 PL 574
PL
Sbjct: 157 PL 158
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Frame = +3
Query: 549 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYP 728
++ P P VV+D + + KT A+ L+++ A+ D G
Sbjct: 150 IENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYIS 209
Query: 729 AXGPLIIFXXDQG-LTRAFRNIPGXXXXXXXXXXXXXXAXGGH 854
GPL++F + + +AFRN+PG A GGH
Sbjct: 210 RKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGH 252
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +1
Query: 685 LRAGKGKMRNRRRIQRXDP 741
+R GKGKMRNRR I R P
Sbjct: 195 IRPGKGKMRNRRYISRKGP 213
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 409 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 507
WW +V LA+ APS P + L SR C
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 497
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 409 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 507
WW +V LA+ APS P + L SR C
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 496
>At4g22120.1 68417.m03198 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 771
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -2
Query: 439 GLRGGEHTSTTTHVTEGXPDRTYGYHHHGHAEFGQQHVRYPM 314
GL G +H + P T G+HH + +RYP+
Sbjct: 644 GLLGTKHAALAAPFLIALPVLTIGFHHFCKGRYEPAFIRYPL 685
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 184 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 279
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 133 LLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 279
L+ +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At1g21326.1 68414.m02666 VQ motif-containing protein contains
PF05678: VQ motif
Length = 239
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 394 EGXPDRTYGYHHHGHAEFGQQH 329
EG D+ Y YHHH H + QQH
Sbjct: 144 EGTMDQYYHYHHHHHHQ-EQQH 164
>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to CLATHRIN
COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
SWISSPROT:Q61548
Length = 599
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 172 PAPSHSSLNTPTIKVGLPIDSFRYFSEAIPPKY 74
PAPS ++ N I +P+D F E PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,534,066
Number of Sequences: 28952
Number of extensions: 399281
Number of successful extensions: 1187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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