Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C05
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15410.1 68417.m02355 UBX domain-containing protein low simil...    46   2e-05
At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-...    42   4e-04
At3g12760.1 68416.m01593 expressed protein similar to RP42 prote...    38   0.011
At4g04210.1 68417.m00597 UBX domain-containing protein similar t...    35   0.079
At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N domain-...    34   0.10 
At1g05040.1 68414.m00505 hypothetical protein                          34   0.14 
At4g22150.1 68417.m03201 UBX domain-containing protein similar t...    29   3.0  
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ...    28   6.8  
At4g10790.1 68417.m01759 UBX domain-containing protein low simil...    28   9.0  

>At4g15410.1 68417.m02355 UBX domain-containing protein low
           similarity to XY40 protein [Rattus norvegicus]
           GI:2547025; contains Pfam profile PF00789: UBX domain
          Length = 421

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +1

Query: 118 EDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNADEAPANPT 270
           E+ +  F ++T +  + + FFLES  W LD A+S+F +N   A   P NPT
Sbjct: 7   ENLINSFIEITSSSREEANFFLESHTWNLDAAVSTFLDNDAAAAAEP-NPT 56



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 731 VDAGPXRHYSDPENAEFLXCI 793
           V+ GP R +SDPENA F+  I
Sbjct: 245 VNDGPLRGFSDPENAAFMNSI 265


>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 649

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 112 NREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNADEAPANP 267
           N+E+ ++QFC++ G   D +  +LE   W L VA+  F       ++  +NP
Sbjct: 426 NKEEIIKQFCEIVGLHPDVAVAYLERCQWSLQVAIDYFMNEAYFTEDVTSNP 477


>At3g12760.1 68416.m01593 expressed protein similar to RP42 protein
           [Homo sapiens] GI:9896486; contains Pfam profile
           PF00627: UBA/TS-N domain, PF03556: Domain of unknown
           function (DUF298)
          Length = 250

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +1

Query: 103 MSANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFY 228
           +S +  D L+QF  +TGA E  +   L++S+W L+ A   FY
Sbjct: 4   LSRSNRDKLQQFVAITGASEKNALQALKASDWHLEAAFDVFY 45


>At4g04210.1 68417.m00597 UBX domain-containing protein similar to
           XY40 protein [Rattus norvegicus] GI:2547025; contains
           Pfam profile PF00789: UBX domain
          Length = 303

 Score = 34.7 bits (76), Expect = 0.079
 Identities = 21/46 (45%), Positives = 26/46 (56%)
 Frame = +1

Query: 442 FYAGGSERSGQQILGPSKGRKDIVSEMFKSVRERGAVVFEDEPTSS 579
           +Y GG E+SG  +  PSK  KD V E+F   R+ GAV    EP  S
Sbjct: 42  YYTGG-EKSGMLVQDPSK--KDDVDEIFNQARQLGAVEGPLEPPPS 84



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 731 VDAGPXRHYSDPENAEFLXCI 793
           +D GP R   DPENA FL  I
Sbjct: 123 IDDGPLRKLDDPENASFLESI 143


>At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N
           domain-containing protein-related contains weak hit to
           Pfam F00627: UBA/TS-N domain; supported by tandem
           duplication of ubiquitin-associated (UBA)/TS-N domain
           protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis
           thaliana]
          Length = 508

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +1

Query: 112 NREDTLRQFC-DVTGADEDRSKFFLESSNWQLDVALSSF 225
           +R +++ +FC  V G   + ++ +LE SNW +++A+ SF
Sbjct: 100 SRNESIARFCYAVAGVSVEEARAYLERSNWNINLAVDSF 138


>At1g05040.1 68414.m00505 hypothetical protein
          Length = 166

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 118 EDT-LRQFCDVTGADEDRSKFFLESSNWQLDVALSSF 225
           EDT + +FC  T A +D + ++LE  +W L+ A+S F
Sbjct: 4   EDTNVTRFCKATSACKDAAFYYLEGFDWNLEDAISGF 40


>At4g22150.1 68417.m03201 UBX domain-containing protein similar to
           XY40 protein [Rattus norvegicus] GI:2547025; contains
           Pfam profile PF00789: UBX domain
          Length = 302

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +2

Query: 731 VDAGPXRHYSDPENAEFLXCI 793
           VD GP R   DPENA FL  I
Sbjct: 127 VDDGPLRKLDDPENASFLDSI 147


>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
           similarity to RNA helicase RH25 [Arabidopsis thaliana]
           GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH31
           GI:3776030
          Length = 522

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 358 FLFSGTFVPEVRRAVIPYRCLAEQRMMPHSLD*LEPHLHYHRSHRNLKEQHLIASL-RIL 182
           FLFS T   EVR+      CL   R     ++ +  H     +H+ +++ H+IASL R  
Sbjct: 244 FLFSATVPEEVRQI-----CLVALRRDHEFVNCV--HEGTIETHQQVRQMHMIASLDRHF 296

Query: 181 KRIYCDLRQH 152
             +Y  LR+H
Sbjct: 297 SLLYTLLREH 306


>At4g10790.1 68417.m01759 UBX domain-containing protein low
           similarity to SP|Q9UNN5 FAS-associated factor 1 (FAF1
           protein) {Homo sapiens}; contains Pfam profile PF00789:
           UBX domain
          Length = 480

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 121 DTLRQFCDVTGA-DEDRSKFFLESSNWQLDVALSSFYENGGNADEA 255
           D L  F  +TG  D D     L++  W L++A+SSF  +  +A  +
Sbjct: 6   DKLGYFQAITGLEDADLCTEILQAHGWDLELAISSFTSSDQDASSS 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,497,528
Number of Sequences: 28952
Number of extensions: 294226
Number of successful extensions: 808
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)