Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C04
         (925 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil...    30   1.9  
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    29   4.4  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    29   4.4  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    29   4.4  

>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 422

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 97  VKGSPLRLRESSPPRHMHSPLRQSPSCYDADSLAQSNTVYVPNYP 231
           VK  P+    ++P R   SP+R+  S       AQ ++++V N P
Sbjct: 239 VKRKPVEKPVAAPERKAPSPIRKQASAESIKPQAQGSSIFVANLP 283


>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 381 RRPARHDVTDSHSAPVFGAAHDPEPEPRGSAPQPHQYVCLRV 256
           RRP  +   + H+AP   A H  +P P    P P ++  + V
Sbjct: 384 RRPKGNSALNHHTAPPTPAPHRSQPHPPAPNPAPPRHHAIPV 425


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
 Frame = +1

Query: 94  RVKGSPLRLRE-------SSPPRHMHSPLRQSP 171
           R++GSP+R R        S PPR + SP R+SP
Sbjct: 290 RIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP 322


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
 Frame = +1

Query: 94  RVKGSPLRLRE-------SSPPRHMHSPLRQSP 171
           R++GSP+R R        S PPR + SP R+SP
Sbjct: 297 RIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSP 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,516,049
Number of Sequences: 28952
Number of extensions: 227557
Number of successful extensions: 762
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2197951248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)