Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D16
         (857 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ...    29   4.0  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    29   5.2  
At3g58880.1 68416.m06562 F-box family protein contains F-box dom...    28   6.9  

>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 290 STAKIKHYADQ-NTSSCTPQERECSIRKSCNNVSVTSM 400
           +TA ++  A   +T S TP+E E S R S NN+  T+M
Sbjct: 324 ATALLQKAAQMGSTKSTTPEEEERSSRSSYNNLITTTM 361


>At4g02660.1 68417.m00361 WD-40 repeat family protein /
           beige-related contains Pfam PF00400: WD domain, G-beta
           repeat; similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; lysosomal trafficking regulator - Bos
           taurus, EMBL: AF114785
          Length = 3471

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +2

Query: 305 KHYADQNTSSCTPQERECSIRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMA 484
           K Y ++  SS + QE+E ++  S N       +  + +++VT  V  H+  F   R  +A
Sbjct: 73  KRYWEEFRSSSSEQEKEAALNLSVNTFCRLVKQHANVDQLVTMLVEPHIFSFVIGRAFVA 132


>At3g58880.1 68416.m06562 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 454

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +3

Query: 429 HLTFWLMLPSLTVDVITWRSLTEIQHVTSYCKKLRQVQISS 551
           H++   ML +LT+D ++W    +++ + S C  L  + +++
Sbjct: 154 HISALPMLKTLTLDSVSWSDSGQLERLLSACPALEALNLAN 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,332,956
Number of Sequences: 28952
Number of extensions: 334982
Number of successful extensions: 810
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)