Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_D14
(843 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 33 0.31
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911... 31 0.72
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 29 2.9
At5g01210.1 68418.m00026 transferase family protein contains Pfa... 29 2.9
At1g28280.1 68414.m03471 VQ motif-containing protein contains PF... 29 2.9
At5g33230.1 68418.m03927 hypothetical protein 29 3.9
At3g29810.1 68416.m03794 phytochelatin synthetase family protein... 28 8.9
At2g26720.1 68415.m03205 plastocyanin-like domain-containing pro... 28 8.9
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 32.7 bits (71), Expect = 0.31
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +1
Query: 226 SDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGL 405
+ D+ R L+ ++K G P +P A + + ++PS A+ L + F L
Sbjct: 71 ASDKQRRLEAALKKNNGVGASRPKPIPVAVNSNSDEADDESLPSAAASSSSLPLNYFTDL 130
Query: 406 DSSPWSVARAAAKSDKIR 459
SS SV AAA+S +R
Sbjct: 131 ASSDASVREAAAESLVLR 148
>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
Plant protein of unknown function (DUF869)
Length = 982
Score = 31.5 bits (68), Expect = 0.72
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Frame = -3
Query: 364 LAPMGSLSRRPELRRDNMPWAHPPVALATVRLLS------------GFGHRAFSIGHPRC 221
++PM +S+ E DNM H L T RLL+ + + C
Sbjct: 330 MSPMSHMSQVSEFSLDNMQKFHKENDLLTERLLAMEEETKMLKEALAKRNSELQVSRNLC 389
Query: 220 FQTQNRAGISESDELSKSPTSVGV*EVPLRCYS 122
+T NR E+ +SKSPT G E+P +S
Sbjct: 390 AKTANRLQTLEAQMMSKSPTKRGF-EMPAEIFS 421
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +1
Query: 376 DLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRRHKDPTAGTRRWRS 546
DLIV R G LD + + K + K A KQL S R K+ A T W++
Sbjct: 433 DLIVHR-GKLDVASSESELLSKKHEAALKAFTDAQKQLSDISTRKKEKAAATTSWKA 488
>At5g01210.1 68418.m00026 transferase family protein contains Pfam
profile PF02458 transferase family
Length = 475
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 421 SVARAAAKSDKIRKKLRWAWKQLRRFSRRHKDPTA--GTRRWRS 546
S+ A+ D + K LRW+ +QL R H D T G W S
Sbjct: 339 SIPTLASAGDLLSKDLRWSAEQLHRNVVAHDDATVRRGIAAWES 382
>At1g28280.1 68414.m03471 VQ motif-containing protein contains
PF05678: VQ motif
Length = 247
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 238 IGHPRCFQTQNRAGISESDELSKSPTS 158
I PRC + N G+S S E +K PT+
Sbjct: 14 IPSPRCHNSNNSCGMSSSSESNKPPTT 40
>At5g33230.1 68418.m03927 hypothetical protein
Length = 126
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 421 SVARAAAKSDKIRKKLRWAWKQLRRFSRRHKDPTAGTRRWRSTKP 555
S++ + +SD+ KK + KQ+ + R+H PT T + R KP
Sbjct: 61 SLSDGSDESDEEDKKKKKKKKQISKKKRKHVGPTLETGKKRGRKP 105
>At3g29810.1 68416.m03794 phytochelatin synthetase family protein /
COBRA cell expansion protein COBL2 similar to
phytochelatin synthetase [Hordeum vulgare subsp.
vulgare] GI:29570314; identified in Roudier, et al,
Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 441
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -3
Query: 553 VLSSATFESQPSDPCDDG*TCGAVSRPTAVSYESYQIWRRLLPLTMVTSRAPRNAS--Q* 380
+L + Q S+ C G A ++ A + S+QI T T RAPRN +
Sbjct: 118 LLPGTPYNQQISNCCRGG-VISAWAQDPATAISSFQISVGQSGTTNTTVRAPRNITLKAP 176
Query: 379 GPGWSLAP 356
GPG++ P
Sbjct: 177 GPGYTCGP 184
>At2g26720.1 68415.m03205 plastocyanin-like domain-containing
protein / mavicyanin, putative similar to mavicyanin
SP:P80728 from [Cucurbita pepo]
Length = 206
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 440 PNLIRFVRNCGGPGNSSAGSAVVTRIRRLGLEGGARQNPGPVVSRAGTSAAS 595
P L F+ CG PG+ G + + L A PGPV S++ +S+ S
Sbjct: 102 PGLQHFI--CGVPGHCKKGQKLQIHVLPASLGHVAVPVPGPVRSQSSSSSPS 151
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,945,337
Number of Sequences: 28952
Number of extensions: 412928
Number of successful extensions: 1282
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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