Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C10
         (874 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family pr...    32   0.58 
At1g49870.1 68414.m05591 expressed protein ; expression supporte...    31   1.3  
At2g33180.1 68415.m04065 expressed protein                             30   2.3  
At4g38210.1 68417.m05393 expansin, putative (EXP20) similar to a...    29   5.4  
At2g16270.1 68415.m01863 expressed protein  and genefinder; expr...    29   5.4  
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    29   5.4  
At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative...    28   7.1  

>At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 253

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -2

Query: 711 GEQPARVQEPEPLGRHRVPQRARNHTATP-ISASRNTRSCQLRDTTGTLVFQNSLRVSEA 535
           GE  A+ +    L  H+  +R R       ++  RN  SC  +    TL+ +   RV E 
Sbjct: 56  GETMAQDRALAALRNHKEAERRRRERINSHLNKLRNVLSCNSKTDKATLLAKVVQRVREL 115

Query: 534 RKQTISMSISARLIRPT 484
           ++QT+  S S + + P+
Sbjct: 116 KQQTLETSDSDQTLLPS 132


>At1g49870.1 68414.m05591 expressed protein ; expression supported
           by MPSS
          Length = 828

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 681 EPLGRH-RVPQRARNHTATPISASRNTRSCQLRDTTGTLVFQNSLRVS 541
           +P+ ++ R P+  +  TATP+   R  R  ++++  G L   NS+R S
Sbjct: 758 QPVNKNKRKPESEKMETATPLLTRRQARDREMQEAWGGLDLGNSIRPS 805


>At2g33180.1 68415.m04065 expressed protein
          Length = 166

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +2

Query: 455 VDLSQLHQSRVGLISLALMLILIVCFLASETLSEFWKTKVPVVSRNWHDLVFRLAEI 625
           ++L+QL  S VG+     ++ L   F+      +FW T+  V++R  + L  R+ EI
Sbjct: 92  IELAQLFDSSVGITGQVELVELDGPFVTISLRGKFWHTRAMVLARLGNYLKQRIPEI 148


>At4g38210.1 68417.m05393 expansin, putative (EXP20) similar to
           alpha-expansin 3 GI:6942322 from [Triphysaria
           versicolor]; alpha-expansin gene family, PMID:11641069
          Length = 256

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 488 GLISLALMLILIVCFLASETLSEFWKTKVPVVSRN 592
           GL  LAL L  I+C L   T  + WK     +SR+
Sbjct: 4   GLQQLALCLFFILCRLFQATAEDDWKIATATLSRD 38


>At2g16270.1 68415.m01863 expressed protein  and genefinder;
           expression supported by MPSS
          Length = 759

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 635 PRPRSRRAGTPGRASCGTPPAP*SSRIRL 549
           P+PR+  AG P R S G  P P +S++ +
Sbjct: 21  PKPRNSEAGDPLRRSFGGNPFPANSKVNI 49


>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
 Frame = -2

Query: 750 REQVGELGFVQLPGEQPARVQEPEPLGRHRVPQ-RA-----RNHTATPISASRNTRSCQL 589
           RE++ E    +  GE+    +    + R R P  RA     +  T  P S SR+ RS  L
Sbjct: 400 RERILERREKERQGERERERKRALEIKRDRTPTARATSKDTKERTPVPKSISRDARSSSL 459

Query: 588 RDTTG--TLVFQNSLRVSEARKQTISMSISARLIRPTRDWCSCDRSTDR 448
           R          + S  +   R+  +   +S+RL+   RD+ + D+   R
Sbjct: 460 RRDAHHREASIRRSSPIKPIRRDYVCKVLSSRLVDMERDYVTLDKRYPR 508


>At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative
           (FUT2) identical to SP|O81053 Probable
           fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2) {Arabidopsis
           thaliana}; similar to xyloglucan fucosyltransferase
           GI:5231145 from [Arabidopsis thaliana]
          Length = 539

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 163 YNEH-R*YFCREEDLLPAHIQWLLRRS 240
           YNEH + +FC E+  L  ++ WL+ R+
Sbjct: 249 YNEHDKMFFCEEDQNLLKNVPWLIMRT 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,790,203
Number of Sequences: 28952
Number of extensions: 324964
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)