Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C06
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36760.2 68417.m05215 aminopeptidase P similar to Xaa-Pro ami...   107   1e-23
At4g36760.1 68417.m05216 aminopeptidase P similar to Xaa-Pro ami...   107   1e-23
At3g05350.1 68416.m00583 aminopeptidase P, cytosolic, putative s...    46   3e-05
At5g36800.1 68418.m04409 expressed protein                             31   1.0  
At5g36710.1 68418.m04393 expressed protein                             31   1.0  
At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger) fa...    31   1.0  
At2g02230.1 68415.m00161 F-box family protein / SKP1 interacting...    29   3.1  
At1g74030.1 68414.m08573 enolase, putative similar to Swiss-Prot...    29   3.1  
At2g21900.1 68415.m02602 WRKY family transcription factor contai...    29   4.2  
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea...    29   5.5  
At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identic...    28   7.3  
At5g07420.1 68418.m00849 pectinesterase family protein contains ...    28   9.6  
At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit, c...    28   9.6  

>At4g36760.2 68417.m05215 aminopeptidase P similar to Xaa-Pro
           aminopeptidase 2 [Lycopersicon esculentum] GI:15384991;
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 519

 Score =  107 bits (257), Expect = 1e-23
 Identities = 59/171 (34%), Positives = 97/171 (56%)
 Frame = +2

Query: 155 MSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQALVWTDGRYY 334
           M+S  P L A ++P+ D H SEY+ A D RRE++S F+GSAG A++T  +A +WTDGRY+
Sbjct: 1   MASHSPPLDALVVPSEDYHQSEYVSARDKRREFVSGFSGSAGLALITKKEARLWTDGRYF 60

Query: 335 TQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWTPIQTALKK 514
            Q  +++    WTLM+  + + P +E W++ NL +   +GVD   ++ D       +  K
Sbjct: 61  LQALQQLS-DEWTLMR--MGEDPLVEVWMSDNLPEEANIGVDSWCVSVDTANRWGKSFAK 117

Query: 515 ISAQLVPISNNLVDDVRIELGDPAPKRSHNELAPLHVRYTGRTAGEKIAEL 667
            + +L+  + +LVD+V      P  + S   + PL   + GR+   K  +L
Sbjct: 118 KNQKLITTTTDLVDEV--WKSRPPSEMSPVVVHPL--EFAGRSVSHKFEDL 164


>At4g36760.1 68417.m05216 aminopeptidase P similar to Xaa-Pro
           aminopeptidase 2 [Lycopersicon esculentum] GI:15384991;
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 634

 Score =  107 bits (257), Expect = 1e-23
 Identities = 59/171 (34%), Positives = 97/171 (56%)
 Frame = +2

Query: 155 MSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQALVWTDGRYY 334
           M+S  P L A ++P+ D H SEY+ A D RRE++S F+GSAG A++T  +A +WTDGRY+
Sbjct: 1   MASHSPPLDALVVPSEDYHQSEYVSARDKRREFVSGFSGSAGLALITKKEARLWTDGRYF 60

Query: 335 TQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWTPIQTALKK 514
            Q  +++    WTLM+  + + P +E W++ NL +   +GVD   ++ D       +  K
Sbjct: 61  LQALQQLS-DEWTLMR--MGEDPLVEVWMSDNLPEEANIGVDSWCVSVDTANRWGKSFAK 117

Query: 515 ISAQLVPISNNLVDDVRIELGDPAPKRSHNELAPLHVRYTGRTAGEKIAEL 667
            + +L+  + +LVD+V      P  + S   + PL   + GR+   K  +L
Sbjct: 118 KNQKLITTTTDLVDEV--WKSRPPSEMSPVVVHPL--EFAGRSVSHKFEDL 164


>At3g05350.1 68416.m00583 aminopeptidase P, cytosolic, putative
           similar to cytosolic aminopeptidase P from [Homo
           sapiens] GI:8489879, [Rattus norvegicus] GI:2760920;
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 569

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
 Frame = +2

Query: 377 MKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWTPIQTALKKISAQLVPISN-NLV 553
           M+   P  PT  +W+A  L  G  VG+DP   + D    ++  + K + +LV + N NLV
Sbjct: 1   MRAGNPGVPTASEWIADVLAPGGRVGIDPFLFSADAAEELKEVIAKKNHELVYLYNVNLV 60

Query: 554 DDVRIELGDPAPKRSHNELAPLHVRYTGRTAGEKIAELDGRWWEKKASA 700
           D++     D  PK    ++    ++Y G     K+  L  +  +   SA
Sbjct: 61  DEI---WKDSRPKPPSRQIRIHDLKYAGLDVASKLLSLRNQIMDAGTSA 106


>At5g36800.1 68418.m04409 expressed protein
          Length = 183

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 603 LCD--LLGAGSPSSILTSSTRLFEIGTSWALIFFRAVCIGVHSSLVIVWGSTPTTSPSLR 430
           LC+  LLG+ S    LT S RLF   +  +LIF   + I    S   ++ S+ + + S R
Sbjct: 16  LCNYILLGSASSCIFLTISLRLFPSLSGLSLIFLYTLTIATAVSGCSIFASSTSATASDR 75

Query: 429 FEASH 415
              SH
Sbjct: 76  LYGSH 80


>At5g36710.1 68418.m04393 expressed protein
          Length = 183

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 603 LCD--LLGAGSPSSILTSSTRLFEIGTSWALIFFRAVCIGVHSSLVIVWGSTPTTSPSLR 430
           LC+  LLG+ S    LT S RLF   +  +LIF   + I    S   ++ S+ + + S R
Sbjct: 16  LCNYILLGSASSCIFLTISLRLFPSLSGLSLIFLYTLTIATAVSGCSIFASSTSATASDR 75

Query: 429 FEASH 415
              SH
Sbjct: 76  LYGSH 80


>At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 306

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 486 HSSLVIVWGSTPTTSPSLRFEASHFSKVGVSGSVCFIKV 370
           HS  ++ W S   + P  RFE    +KVG+ GS   +++
Sbjct: 192 HSDCIVPWLSDHNSCPLCRFELPTTAKVGIGGSEAEMRI 230


>At2g02230.1 68415.m00161 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 317

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
 Frame = -2

Query: 477 LVIVWGSTPTTSPSLRFEASHFSKVGVSGSVCFIKVHADKSTS-LSNCV*YLPSVQTRAC 301
           L I+WG +P     +    S F KV    +VC+ +V    S   LS    Y   V  +  
Sbjct: 132 LTIIWGDSPAYWKWITVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTA 191

Query: 300 DDVTTAVPADPVKADIH--SRLASAASMYSE 214
           +  +      PV+A +    ++A+  S+Y E
Sbjct: 192 NGRSYGFDLVPVEAGVGFVGKVATKKSVYFE 222


>At1g74030.1 68414.m08573 enolase, putative similar to
           Swiss-Prot:P15007 enolase (EC 4.2.1.11)
           (2-phosphoglycerate dehydratase)(2-phospho-D- glycerate
           hydro-lyase) [Drosophila melanogaster]
          Length = 477

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 30/140 (21%), Positives = 57/140 (40%)
 Frame = +2

Query: 257 SAFTGSAGTAVVTSSQALVWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLK 436
           + +TG     +  ++      DGRY   F+++ +  A  L  ++L D           +K
Sbjct: 279 AGYTGKIKIGMDVAASEFFMKDGRYDLNFKKQPNDGAHVLSAESLADL------YREFIK 332

Query: 437 DGDVVGVDPQTMTRDEWTPIQTALKKISAQLVPISNNLVDDVRIELGDPAPKRSHNELAP 616
           D  +V ++     +D+W+   +    +  QLV   ++L+      + +   K+S N L  
Sbjct: 333 DFPIVSIE-DPFDQDDWSSWASLQSSVDIQLV--GDDLLVTNPKRIAEAIKKQSCNALL- 388

Query: 617 LHVRYTGRTAGEKIAELDGR 676
           L V   G       A LD +
Sbjct: 389 LKVNQIGTVTESIQAALDSK 408


>At2g21900.1 68415.m02602 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 202

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +2

Query: 509 KKISAQLV-PISNNLVDD-VRIELGDP---APKRSHNELAPLHVRYTGRTAGEKIAELDG 673
           K ++A++  P+  +L    +  E+GD      ++ H E   +HV  T  +  EK+A  DG
Sbjct: 52  KLVAAEITSPLQTSLATSPMSFEIGDKDEIKKRKRHKEDPIIHVFKTKSSIDEKVALDDG 111

Query: 674 RWWEKKASAP 703
             W K    P
Sbjct: 112 YKWRKYGKKP 121


>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
            family protein contains 6 (4 significant) WD-40 repeats
            (PF0400); nuclear protein HIRA, mouse, PIR:S68141
          Length = 1051

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = +2

Query: 332  YTQF-EREVDLSAWTLMKQTLPDTPTLEKWLAS---NLK-DGDVVGVDPQTMTRDEWTPI 496
            Y +F  RE D S    + ++    PT     AS   NL  D  V+GV    + R++  P 
Sbjct: 888  YVRFLAREADESRLREVCESFLGPPTGMAEAASSDTNLSWDPYVLGVKKHKLLRNDILPA 947

Query: 497  QTALKKISAQLVPISNNLVDDVRIELGDPAPKRS 598
              + +K+   L    + L +   +E  DPAPK S
Sbjct: 948  MASNRKVQRLLNEFIDLLSEYEDVETADPAPKGS 981


>At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identical
           to mRNA cap binding protein [Arabidopsis thaliana]
           GI:15192738; contains Pfam profile PF02854: MIF4G
           domain; identical to cDNA nuclear cap-binding protein
           CBP80 GI:8515770
          Length = 848

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 314 WTDGRYYTQ--FEREVDLSAWTLMKQTLPDTPTLEKWL 421
           W   R + Q   +REV LS W  +KQ++ +   LE+ L
Sbjct: 439 WAPKRVFVQEILQREVRLSYWDKIKQSIENATALEELL 476


>At5g07420.1 68418.m00849 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 361

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -2

Query: 489 VHSSLVIVWGSTPTTSPSLRFEASHFSKVGVSGSVCFIKVHADKSTSLSNCV*YLPSVQT 310
           V S+ +IVW +    +       S   K G  G    ++++ DK+ +  NC  Y    Q 
Sbjct: 141 VESATLIVWATNFLAANLNIINTSPMPKPGTQGQALAMRINGDKA-AFYNCRFY--GFQD 197

Query: 309 RACDD 295
             CDD
Sbjct: 198 TLCDD 202


>At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit,
           component I-1 (ASA1) identical to SP|P32068
          Length = 595

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 176 LAAYIIPTADAHNSEY-IDAADARREWISAFTGSAGTAVVTSSQ 304
           L   + PTA  +N+ Y    A+ RREW++     AG    +  Q
Sbjct: 525 LRTIVFPTACQYNTMYSYKDANKRREWVAYLQAGAGVVADSDPQ 568


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,521,590
Number of Sequences: 28952
Number of extensions: 386340
Number of successful extensions: 901
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)