Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C05
         (878 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43682.1 68416.m04659 hypothetical protein                          30   2.3  
At4g37610.1 68417.m05321 TAZ zinc finger family protein / BTB/PO...    29   5.4  
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ...    29   5.4  
At5g17300.1 68418.m02026 myb family transcription factor similar...    28   9.5  
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    28   9.5  
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t...    28   9.5  
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t...    28   9.5  
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    28   9.5  

>At3g43682.1 68416.m04659 hypothetical protein
          Length = 150

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -1

Query: 443 GLVITLRV-GMARQRRGLLCGRQP-QFLRR--REPRHNAVG 333
           G+++ + V G +R  RG+LCG  P +F RR    PRHN  G
Sbjct: 94  GVILRIAVRGASRSGRGILCGDVPRRFWRRLGTFPRHNPRG 134


>At4g37610.1 68417.m05321 TAZ zinc finger family protein / BTB/POZ
           domain-containing protein contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
           similar to Speckle-type POZ protein (SP:O43791) [Homo
           sapiens]
          Length = 368

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 626 HLADRLLKRLAPADCLEVRSLXDLSPHHLAQLDAYIAQHFEXVC 757
           H A R+  R   + C E + + D + H L     Y+  H + VC
Sbjct: 104 HHALRVFIRFLYSSCYEKQDMEDFAIHLLVLSHVYVVPHLKRVC 147


>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
           PF00069: Protein kinase domain
          Length = 710

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 731 YKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP 621
           ++ P  P D  +      PP+ LP P +S  G P +P
Sbjct: 124 FEPPPPPADEDESPPAPPPPEQLPPPASSPQGGPKKP 160


>At5g17300.1 68418.m02026 myb family transcription factor similar to
           CCA1 [Arabidopsis thaliana] GI:4090569; contains Pfam
           profile PF00249: Myb-like DNA-binding domain
          Length = 387

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 643 QTVRQVSPDRLDTQPPGGTIQSPGRERIFDPNST 542
           QT R VSP   DTQ P   + + G E +   +S+
Sbjct: 143 QTSRSVSPSERDTQSPTSVLSTVGSEALCSLDSS 176


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 773 PSL-LXRIPXRNAAQYKRPAVPNDGAKDRXET-EPPDNLPEPIASTNGPPGEP*P 615
           PSL L ++P + + Q + P  P  G      T +PP   P P  S + PP +P P
Sbjct: 279 PSLQLPQLPNQFSPQ-QEPYFPPSGQSQPPPTIQPPYQPPPPTQSLHQPPYQPPP 332


>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 439

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -1

Query: 752 PXRNAAQYKRP-AVPNDGAKDRXETEPPDNLPEPIASTN--GPPGEP*PTRHAASRRH 588
           P +N A +    A PN G  +  +   PD++P  +A  N   PPG    + + A R H
Sbjct: 244 PIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMGSGYPAMRGH 301


>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 441

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -1

Query: 752 PXRNAAQYKRP-AVPNDGAKDRXETEPPDNLPEPIASTN--GPPGEP*PTRHAASRRH 588
           P +N A +    A PN G  +  +   PD++P  +A  N   PPG    + + A R H
Sbjct: 245 PIQNQAAFSNMIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMGSGYPAMRGH 302


>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = -1

Query: 710 NDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTRHAASRRHDT 582
           N    D     PP  LPE  A+T G P  P P  H   RR  T
Sbjct: 80  NHHHNDHRRQPPP--LPENRAATAGQPPSPSPDNHRHHRRTTT 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,805,705
Number of Sequences: 28952
Number of extensions: 340713
Number of successful extensions: 959
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)