Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C01
(841 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 309 2e-84
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 302 2e-82
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 302 2e-82
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil... 31 0.95
At1g29195.1 68414.m03572 expressed protein 30 1.7
At4g01540.1 68417.m00200 no apical meristem (NAM) family protein... 29 2.9
At4g01520.1 68417.m00196 no apical meristem (NAM) family protein... 29 2.9
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 309 bits (758), Expect = 2e-84
Identities = 147/272 (54%), Positives = 190/272 (69%), Gaps = 1/272 (0%)
Frame = +2
Query: 29 VAQKNFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
++ + F+HP HGS+GF P+KR+ RHRGKVKAFPKDDP+KP LT+F+GYKAGMTH+VR+
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
++PGSK++KKE EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 565
NW + E G+K I+ +KM +YCSV+RV+AHTQ++ +K +QKKAH
Sbjct: 121 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAH 180
Query: 566 IMEIQLNGGTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHKE 745
+ EIQ+NGG I KV +A EK +P + +G+ +
Sbjct: 181 LNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 746 ATRKTHKGLXKVACIGAWHPSRVSXTVXRAGQ 841
RKTH+GL KVACIGAWHP+RVS TV RAGQ
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQ 272
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 648 VDSVFAQDEMVDCIXXXXXXXXXXXXSRWHTKKLPVRHTRVLXKLPAL 791
VD++F +DEM+D I +RW +LP + R L K+ +
Sbjct: 208 VDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACI 255
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 302 bits (741), Expect = 2e-82
Identities = 146/272 (53%), Positives = 187/272 (68%), Gaps = 1/272 (0%)
Frame = +2
Query: 29 VAQKNFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
++ + F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
++PGSK++KKE EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 565
NW + E G+K I+ +KM +Y +V+RV+AHTQ++ +K +QKKAH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 566 IMEIQLNGGTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHKE 745
+MEIQ+NGGTI KV +A EK IP + +G+ +
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 746 ATRKTHKGLXKVACIGAWHPSRVSXTVXRAGQ 841
RKTH+GL KVACIGAWHP+RVS TV RAGQ
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQ 272
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 648 VDSVFAQDEMVDCIXXXXXXXXXXXXSRWHTKKLPVRHTRVLXKLPAL 791
+++VF +DEM+D I +RW +LP + R L K+ +
Sbjct: 208 IEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACI 255
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 302 bits (741), Expect = 2e-82
Identities = 146/272 (53%), Positives = 187/272 (68%), Gaps = 1/272 (0%)
Frame = +2
Query: 29 VAQKNFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
++ + F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
++PGSK++KKE EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 565
NW + E G+K I+ +KM +Y +V+RV+AHTQ++ +K +QKKAH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 566 IMEIQLNGGTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHKE 745
+MEIQ+NGGTI KV +A EK IP + +G+ +
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 746 ATRKTHKGLXKVACIGAWHPSRVSXTVXRAGQ 841
RKTH+GL KVACIGAWHP+RVS TV RAGQ
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQ 272
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 648 VDSVFAQDEMVDCIXXXXXXXXXXXXSRWHTKKLPVRHTRVLXKLPAL 791
+++VF +DEM+D I +RW +LP + R L K+ +
Sbjct: 208 IEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACI 255
>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
[Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
profile PF03328: HpcH/HpaI aldolase family
Length = 358
Score = 31.1 bits (67), Expect = 0.95
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = -1
Query: 388 FVEATSTVFRHMLRPDSQKSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDLFLVDF*TGTV 209
F T T R+ P A ++ ++N + T+ + L G++L+ LFL+ F
Sbjct: 46 FSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGLFLLSFSPTLA 103
Query: 208 RFSNHVGHTGLITD 167
+ H G+ ++ D
Sbjct: 104 EIAAHAGYDYVVVD 117
>At1g29195.1 68414.m03572 expressed protein
Length = 193
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 155 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 277
+TA KA HV+++P P S ++++++ A I+ PP
Sbjct: 37 ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77
>At4g01540.1 68417.m00200 no apical meristem (NAM) family protein
similar to NAC1 (GI:7716952) {Medicago truncatula};
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 423
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 592 YHRGQSEMGQRTSGETYPWSILCLP--KMKWLTALVSPRAKDTKVS 723
YH G+S G RT + + I CLP K K++ V + + ++S
Sbjct: 116 YHEGKSPHGVRTPWVMHEYHITCLPHHKRKYVVCQVKYKGEAAEIS 161
>At4g01520.1 68417.m00196 no apical meristem (NAM) family protein
similar to NAC1 (GI:7716952) {Medicago truncatula};
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 302
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 592 YHRGQSEMGQRTSGETYPWSILCLP--KMKWLTALVSPRAKDTKVS 723
YH G+S G RT + + I CLP K K++ V + + ++S
Sbjct: 116 YHEGKSPHGVRTPWVMHEYHITCLPHHKRKYVVCQVKYKGEAAEIS 161
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,037,052
Number of Sequences: 28952
Number of extensions: 412236
Number of successful extensions: 1037
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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