Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B24
         (890 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    28   7.2  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    28   7.2  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    28   9.6  

>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
 Frame = +1

Query: 559 HQPDHQIPDSIHQPPQ---T*HPFP-SIP*TPYXKEFAPGLKPPLSSEAPSAYLTP 714
           HQP HQ P     PPQ   +  P P S+P       F+    P  S   PS Y  P
Sbjct: 262 HQPYHQDPPKHMPPPQNYSSHEPSPNSLPNFQSYPSFSESSLPSTSPHYPSHYQNP 317


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +1

Query: 565 PDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTP 714
           P H  P  +H PP   H  P    +P     +P   PP+ S  P  Y  P
Sbjct: 541 PVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSP--PPPVHSPPPPVYSPP 588



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +1

Query: 565 PDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTP 714
           P H  P  +H PP   H  P    +P    ++P   PP+ S  P  +  P
Sbjct: 555 PVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPP-PPPVHSPPPPVHSPP 603



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +1

Query: 580 PDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTP 714
           P  +H PP   H  P    +P    ++P   PP+ S  P  +  P
Sbjct: 589 PPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPPPVHSPPPPVFSPP 633


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 313 QSLPNVSSIIKGYRDAY 363
           QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,368,615
Number of Sequences: 28952
Number of extensions: 427169
Number of successful extensions: 1191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)