Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_B11
(892 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 1.0
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 30 2.4
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 29 4.1
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 29 4.1
At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger) fa... 29 5.5
At3g17570.1 68416.m02243 F-box family protein contains Pfam PF00... 29 5.5
At1g64340.1 68414.m07291 hypothetical protein 29 5.5
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 9.6
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 9.6
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 481 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 335
LG +H PA +I+R P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 611 DTCVIL*QMYRPSQTPPPGSVLEPDHAGVLNGDERFRHVTTLHAWNE 471
+ C L + + P+Q PP S +E + + LNGD VT ++ N+
Sbjct: 662 EVCESLCEDFDPTQIFPPSSEVETEQSDTLNGDFANNLVTRSYSSNQ 708
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 165 FSSPDHHAIVFSDSGRNHHGLGSEDPRDSHPPDRGRTPAKL 43
F+SP HH ++F+DS N+ GS+ S D TP+ L
Sbjct: 471 FASPAHHLLLFADSADNN---GSDLWSPSSDNDDNSTPSTL 508
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -2
Query: 588 DVPPQSNSPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRP 424
+VPPQ P W RT ++ RR P AR E PP +++ RP
Sbjct: 16 EVPPQ---PVWPQTRTRMDPTWLSRRPLPTVDSHARAEHTNQAPPNGASSDTSRP 67
>At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 235
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 162 SSPDHHAIVFSDS--GRNHHGLGSEDPRDSHPPDRGRTPAKLD 40
SS D AI SD G +H G+E DS P D R PA ++
Sbjct: 130 SSMDEVAISISDPVYGDTNHHEGTETTGDSVPEDSQRKPAAIE 172
>At3g17570.1 68416.m02243 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 381
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 1 YWLTSETDIKHLLIQFRRRTATIGRVGI 84
YW S+T+ +H++++F T GR+ +
Sbjct: 202 YWFASDTEGRHIILRFDFATERFGRLSL 229
>At1g64340.1 68414.m07291 hypothetical protein
Length = 265
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 697 DCESTAYRSFXIKSFNQ 747
DCEST Y SF + SFN+
Sbjct: 124 DCESTLYDSFELNSFNR 140
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 445 DRAPLPPNRVSNETMKVVVFQRRSRET 365
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 496 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 359
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,544,055
Number of Sequences: 28952
Number of extensions: 411985
Number of successful extensions: 1051
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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