Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C03_e19_05.seq
         (1600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2) ide...    31   2.1  
At1g18570.1 68414.m02316 myb family transcription factor (MYB51)...    29   6.5  
At5g61090.1 68418.m07665 proline-rich family protein contains pr...    29   8.6  

>At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2)
           identical to phage-type RNA polymerase rpoT2
           [Arabidopsis thaliana] GI:11340683
          Length = 1011

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 178 AISKVANHVEISNQRISLVGSGPPIAKRFHLQTRFPTAGATTHGR 312
           AIS+ A  + +S+Q   L+ S P      +L  RFP  G+  HG+
Sbjct: 48  AISRSAARLNVSSQTRGLLVSSPESIFSKNLSFRFPVLGSPCHGK 92


>At1g18570.1 68414.m02316 myb family transcription factor (MYB51)
           contains PFAM profile: PF00249
          Length = 352

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +1

Query: 127 NSSNRMTYLTYGLLGAYAISKVANHV-EISNQRI--SLVGSGPPIAKRFHLQTRFPTAGA 297
           N   +     +GL  A  ++KVAN   +  NQ +   ++GSG P+A   H      T+ +
Sbjct: 157 NDKAKKNNKNFGLSSASFLNKVANRFGKRINQSVLSEIIGSGGPLASTSHTTNTTTTSVS 216

Query: 298 TTHGRRPVTRNSVSPT 345
                   T +S +PT
Sbjct: 217 VDSESVKSTSSSFAPT 232


>At5g61090.1 68418.m07665 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains similarity to vegetative cell wall protein gp1
           [Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
           common family members: At4g18570, At3g25690, At4g04980
           [Arabidopsis thaliana]
          Length = 344

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 433 SLVTTRSLSCARTPMNYSITSLAPTPVSV 519
           +LV TR  S A +P++   TS+ P+PVSV
Sbjct: 153 TLVPTRPTSTAPSPVSAHPTSVVPSPVSV 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,730,883
Number of Sequences: 28952
Number of extensions: 443503
Number of successful extensions: 888
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4318089216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)