Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A03_e17_01.seq
         (1445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45940.1 68416.m04971 alpha-xylosidase, putative strong simil...    29   5.7  

>At3g45940.1 68416.m04971 alpha-xylosidase, putative strong
           similarity to alpha-xylosidase precursor GI:4163997 from
           [Arabidopsis thaliana]
          Length = 868

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -2

Query: 430 KNTRANEISLHPLYRDVF*FLSEPPPPFRASCDLYGRSPMFKIKQNISVK 281
           +N++AN I L P   + +   +E    F  + DLYG  P++   +N+S K
Sbjct: 179 ENSQANGIKLVP--NEPYTLFTEDVSAFNLNTDLYGSHPVYMDLRNVSGK 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,399,624
Number of Sequences: 28952
Number of extensions: 472644
Number of successful extensions: 742
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3826521024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)