Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41052
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   6.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   6.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.7  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   8.7  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   8.7  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 195 RPCQSISFFVGHIYSLEFFRVRISVTYVLNY 287
           RPC  ++  +   Y+L  +  RI+ TYV  Y
Sbjct: 193 RPCNVLATSLTEPYTLRNYGRRINCTYVALY 223


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 630 LVKSVSRILHGYNFRSRNIYG 692
           + +++SRIL GY+ R R  +G
Sbjct: 37  VTQTISRILDGYDIRLRPNFG 57


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 620 LQLSYPHITDY 588
           LQL YPH+ +Y
Sbjct: 268 LQLYYPHVPEY 278


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 55  ALCHKFHYWSTLPAI 11
           ALC+  H+W   P I
Sbjct: 465 ALCNTLHHWHHCPEI 479


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 620 LQLSYPHITDY 588
           LQL YPH+ +Y
Sbjct: 283 LQLYYPHVPEY 293


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 459 HEVLHPKLMITCFWQQCILAI 397
           H V+HP      +W  C+L +
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLL 98


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 459 HEVLHPKLMITCFWQQCILAI 397
           H V+HP      +W  C+L +
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLL 98


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 459 HEVLHPKLMITCFWQQCILAI 397
           H V+HP      +W  C+L +
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLL 98


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 372 NIDNRTLNWYCSYKNLIRNY*IIAYQLNY 286
           N +N   N Y    N   NY  + Y +NY
Sbjct: 95  NYNNNNYNNYNYNNNNYNNYKKLYYNINY 123


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +2

Query: 407 IHCCQKHVIINFGCKTSW 460
           +  C+K V    GC+ +W
Sbjct: 112 VETCKKEVTSTEGCEVAW 129


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +2

Query: 407 IHCCQKHVIINFGCKTSW 460
           +  C+K V    GC+ +W
Sbjct: 86  VETCKKEVTSTEGCEVAW 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,689
Number of Sequences: 438
Number of extensions: 3742
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)