Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41050
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   2.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   8.2  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 71  HELPRSGRRPTARF*PTLIGSRRSRHRLVRW 163
           H +P+  R+   ++ PT++  RR +   +RW
Sbjct: 328 HRMPQLIRKIFLKYLPTILMMRRPKKTRLRW 358


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 17 LSTCDVATSTGHSFRFSPHEL 79
          L+ C   +STG S  FSP EL
Sbjct: 21 LTQCLQESSTGQSVEFSPMEL 41


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 662 LRDSK*IINYYLIHLKIDHERLLA 591
           L   K II+YYL+    DH + L+
Sbjct: 281 LHKMKNIIDYYLVLENTDHTKQLS 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,629
Number of Sequences: 438
Number of extensions: 4145
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)