Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV41045
(681 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL732446-2|CAI13576.1| 625|Homo sapiens RMI1, RecQ mediated gen... 32 2.2
BX538178-1|CAD98052.1| 1175|Homo sapiens hypothetical protein pr... 31 3.8
BX538177-1|CAD98051.1| 1175|Homo sapiens hypothetical protein pr... 31 3.8
Z84487-2|CAI42674.1| 2492|Homo sapiens alpha thalassemia/mental ... 31 5.0
Z84487-1|CAI42675.1| 2454|Homo sapiens alpha thalassemia/mental ... 31 5.0
U97103-1|AAC51657.1| 2375|Homo sapiens X-linked nuclear protein ... 31 5.0
U75653-1|AAC51655.1| 2492|Homo sapiens zinc finger helicase prot... 31 5.0
U72938-1|AAB49971.2| 2454|Homo sapiens putative DNA dependent AT... 31 5.0
U72937-1|AAB49970.2| 2492|Homo sapiens putative DNA dependent AT... 31 5.0
U72936-1|AAB49969.1| 2288|Homo sapiens putative DNA dependent AT... 31 5.0
U72935-3|AAB40700.1| 2288|Homo sapiens putative DNA dependent AT... 31 5.0
U72935-2|AAB40699.1| 2337|Homo sapiens putative DNA dependent AT... 31 5.0
U72935-1|AAB40698.1| 2375|Homo sapiens putative DNA dependent AT... 31 5.0
U09820-1|AAC50069.1| 1641|Homo sapiens helicase II protein. 31 5.0
EF467914-1|ABO43036.1| 2492|Homo sapiens alpha thalassemia/menta... 31 5.0
AL121874-2|CAI40710.1| 2492|Homo sapiens alpha thalassemia/menta... 31 5.0
AL121874-1|CAB90351.2| 2454|Homo sapiens alpha thalassemia/menta... 31 5.0
AL109753-2|CAI43115.1| 2492|Homo sapiens alpha thalassemia/menta... 31 5.0
AL109753-1|CAI43116.1| 2454|Homo sapiens alpha thalassemia/menta... 31 5.0
AB209545-1|BAD92782.1| 1224|Homo sapiens transcriptional regulat... 31 5.0
AB208928-1|BAD92165.1| 1383|Homo sapiens transcriptional regulat... 31 5.0
AB102641-1|BAC81110.1| 2492|Homo sapiens ATRX protein. 31 5.0
>AL732446-2|CAI13576.1| 625|Homo sapiens RMI1, RecQ mediated genome
instability 1, homologr 3 protein.
Length = 625
Score = 31.9 bits (69), Expect = 2.2
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 305 PVVSAISNKGENRRRNKIIAETDSDSDSDANLRVRKAEYKITRLKRNSSSSNKTKQNDAN 484
P+ +NK +N + I +T S N ++ E KRNS SN +ND N
Sbjct: 409 PLAHDFTNKEKNLETDNKIKQTSSSDSHSLNNKILNREVVNYVQKRNSQISN---ENDCN 465
Query: 485 LES 493
L+S
Sbjct: 466 LQS 468
>BX538178-1|CAD98052.1| 1175|Homo sapiens hypothetical protein
protein.
Length = 1175
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 377 DSDSDANLRVRKAEYKITRLKRNSSSSNKTKQNDANLESPK 499
++ S N K E +I LK+N S + + KQN++ + PK
Sbjct: 632 ETKSSENKLETKVETQIEELKQNESRTTECKQNESTIVEPK 672
>BX538177-1|CAD98051.1| 1175|Homo sapiens hypothetical protein
protein.
Length = 1175
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 377 DSDSDANLRVRKAEYKITRLKRNSSSSNKTKQNDANLESPK 499
++ S N K E +I LK+N S + + KQN++ + PK
Sbjct: 632 ETKSSENKLETKVETQIEELKQNESRTTECKQNESTIVEPK 672
>Z84487-2|CAI42674.1| 2492|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2492
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1310 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1362
>Z84487-1|CAI42675.1| 2454|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2454
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1272 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1324
>U97103-1|AAC51657.1| 2375|Homo sapiens X-linked nuclear protein
protein.
Length = 2375
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1193 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1245
>U75653-1|AAC51655.1| 2492|Homo sapiens zinc finger helicase protein.
Length = 2492
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1310 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1362
>U72938-1|AAB49971.2| 2454|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2454
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1272 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1324
>U72937-1|AAB49970.2| 2492|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2492
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1310 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1362
>U72936-1|AAB49969.1| 2288|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2288
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1106 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1158
>U72935-3|AAB40700.1| 2288|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2288
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1106 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1158
>U72935-2|AAB40699.1| 2337|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2337
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1155 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1207
>U72935-1|AAB40698.1| 2375|Homo sapiens putative DNA dependent ATPase
and helicase protein.
Length = 2375
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1193 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1245
>U09820-1|AAC50069.1| 1641|Homo sapiens helicase II protein.
Length = 1641
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 451 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 503
>EF467914-1|ABO43036.1| 2492|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked protein.
Length = 2492
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1310 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1362
>AL121874-2|CAI40710.1| 2492|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2492
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1310 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1362
>AL121874-1|CAB90351.2| 2454|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2454
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1272 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1324
>AL109753-2|CAI43115.1| 2492|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2492
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1310 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1362
>AL109753-1|CAI43116.1| 2454|Homo sapiens alpha thalassemia/mental
retardation syndrome X-linked (RAD54 homolog, S. cerev
protein.
Length = 2454
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1272 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1324
>AB209545-1|BAD92782.1| 1224|Homo sapiens transcriptional regulator
ATRX isoform 1 variant protein.
Length = 1224
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 607 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 659
>AB208928-1|BAD92165.1| 1383|Homo sapiens transcriptional regulator
ATRX isoform 2 variant protein.
Length = 1383
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1275 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1327
>AB102641-1|BAC81110.1| 2492|Homo sapiens ATRX protein.
Length = 2492
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 NKGENRRRNKIIAETDSDSDSDANLRVRK--AEYKITRLKRNSSSSNKTKQND 478
N G+ +N++ +E+DSDS+ R R +K+T S KTK +
Sbjct: 1310 NPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKE 1362
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,419,713
Number of Sequences: 237096
Number of extensions: 1066491
Number of successful extensions: 2985
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2964
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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