Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41045
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.88 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.88 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.88 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.88 
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   6.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.2  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   8.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.2  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 572 KTIILKSLNLYLIKVKLMLSKLKIFW 649
           K+  L SLN YLIK + +   +K+ W
Sbjct: 227 KSPSLTSLNAYLIKNQTITCPIKVSW 252


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 572 KTIILKSLNLYLIKVKLMLSKLKIFW 649
           K+  L SLN YLIK + +   +K+ W
Sbjct: 227 KSPSLTSLNAYLIKNQTITCPIKVSW 252


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 572 KTIILKSLNLYLIKVKLMLSKLKIFW 649
           K+  L SLN YLIK + +   +K+ W
Sbjct: 278 KSPSLTSLNAYLIKNQTITCPIKVSW 303


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 572 KTIILKSLNLYLIKVKLMLSKLKIFW 649
           K+  L SLN YLIK + +   +K+ W
Sbjct: 227 KSPSLTSLNAYLIKNQTITCPIKVSW 252


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 350 NKIIAETDSDSDSDANLRVRK 412
           NK+I E  + SD+D +L+  K
Sbjct: 98  NKLITECSAISDADIHLKSSK 118


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +2

Query: 257 SPSLVFKTSERLSTLTPVVSAISNKGENRRRNKIIAETDSDSDSDAN 397
           +PS V  TS   + +T   + I  +   +RR       D   D + N
Sbjct: 240 TPSAVVATSNATAAMTTGTTTIPTRRLRKRRQNDGEGADDRDDDEEN 286


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 571 KNNNTKVAQSILDKSKTD--VIKTENILDTHDENRNSKL 681
           + N   + Q++LD ++TD  +++   I D +   + SK+
Sbjct: 81  EKNTRDIVQAVLDDNETDQLIVECSPISDANVHIKISKI 119


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 150 INRRNILASAKCRSGRDAKVKSPVV 224
           +N R+++A A+  SG+ A    P++
Sbjct: 231 MNGRDLMACAQTGSGKTAAFAVPII 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,778
Number of Sequences: 438
Number of extensions: 2540
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)