Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41044
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    27   3.0  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    27   3.0  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    27   4.0  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   5.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.2  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    25   9.2  

>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 410 LVKCRFDYLY*TITHISLYIYSMFICNALFMFLCIYALFTF 288
           L+ C + Y Y  I H S+++Y++ I +     +  YA   F
Sbjct: 464 LLCCYYIYSYKLIPHSSIFVYTVPIISTFLFPMVTYAALRF 504


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 361 LCTYTLCLFVMLYSCFFVSMLYLHFFVYYTLF 266
           L T  +C  + LYS F  ++LYL    Y  +F
Sbjct: 363 LFTEPICFLITLYSSFVYAILYLLLEAYPIIF 394


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 261 VHVCVFLDHLFDCNKTCIRSLVI*CSNFRSIL 166
           V +C+F+ H   C K     L   C N +S++
Sbjct: 479 VRICLFIVHYLSCEKVLCEKLNRNCMNAQSLM 510


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 374 ITHISLYIYSMFICNALFMFLCIYALFTF--LCLLYSISLYMSVYF*TIYSIATKL 213
           IT + +++Y  F    +F+ L  Y  +TF     L  +S Y+S YF  I S +T L
Sbjct: 2   ITFLEVFVYFYFFPLLVFITLQ-YPRWTFNKWKALLPVSAYISFYFIIISSFSTHL 56


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 284  CLLYSISLYMSVYF*TIYSIATKLVYGHW*FNVVILGVFYLE 159
            C LY +S+   V+F   Y IA+ L      F+ V+ G  Y+E
Sbjct: 4091 CQLYGVSIQSLVFFTWGYYIASVLNCPDIVFHTVLSGRTYIE 4132


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = -2

Query: 364 FLCTYTLCLFVMLYSCFFVSMLYLHFFVYYTLFLCTCLCIFRPFIRLQQNLYTVIGNL 191
           FLC   +CL+ M++         ++F  + T F C    ++  FI L++ +  +   L
Sbjct: 123 FLCW--ICLWSMIFHFIIAIANGVYFVKHITKFSCEIFGLYVAFIYLEKGVQVLCDQL 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,978
Number of Sequences: 5004
Number of extensions: 49600
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)