Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41040
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   0.41 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.6  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 98  EPWPK-PWTRRSSLPRGFSSSTGKSLKTATSSTMPRSLNTSR 220
           EP PK PW +   + R   ++ GK+L  A  + +P S  T +
Sbjct: 203 EPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRPTDK 244


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 222 GIRESASRYDSSLAGHTSDLKRFITENNGKDLSLAVYLFDEYLQKV 359
           GI ESA   D    GH S L  F  E      S+    F+ ++ K+
Sbjct: 851 GITESAESEDGPRWGHLSTLVEFALELKKALSSINEQSFNHFVLKM 896


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 229 VSQQADTIRASRVTPRTSSGS*P 297
           VS   DT+  S VTPR+   + P
Sbjct: 899 VSLAVDTVARSNVTPRSPGRAWP 921


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 258 GSNRIGLLTHEFLLDVLSDL 199
           GS  IG+    FLL  L DL
Sbjct: 61  GSTNIGINKWRFLLQCLEDL 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,350
Number of Sequences: 438
Number of extensions: 2494
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)