Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41028
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        25   0.62 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.4  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   2.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.8  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   7.7  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 87  KFLPYLSYWKQFNSRLATNLSRFVCEALI 1
           K LPY  YW ++  R  T+LSR   EA +
Sbjct: 293 KVLPY--YWYKYQDRRDTDLSRADLEATL 319


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +1

Query: 343 TVQALQGFGVDRHLLGLKLIALEN 414
           T QAL        LLGLKLI  EN
Sbjct: 263 TEQALDASNAPEGLLGLKLINAEN 286


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 120 ICKWRCNWLSTDYTTRPARTTSQQQQG 200
           +  W+  WLS +++    R  +Q+++G
Sbjct: 66  VLSWQSKWLSINHSACAIRCLAQRRKG 92


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 490 VACKCDGSCVTGPSCRTATPL 552
           + C  D S  T P+C + TPL
Sbjct: 34  LVCSPDLSVFTSPACGSETPL 54


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 400 IALENGIELPKLYTDPGYTRSAHMRISTSQVAC 498
           + ++  IELP+L     YT       ST    C
Sbjct: 201 LVVDENIELPQLQLVKNYTADCTQVYSTGNFTC 233


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 418 IELPKLYTDPGYTRSAHMRISTSQVAC 498
           IELP+L     YT    +  ST    C
Sbjct: 176 IELPQLDISNNYTTDCTIEYSTGNFTC 202


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 555 YNPRDNDVNFATSAFVENPATSCDKY 632
           Y P   +V+ + S  V +P T+ D Y
Sbjct: 40  YGPEAGNVSCSVSWEVHDPVTNSDTY 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,231
Number of Sequences: 438
Number of extensions: 4490
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)